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All Journal International Journal of Evaluation and Research in Education (IJERE) Jurnal Pendidikan dan Pemberdayaan Masyarakat Jurnal Pendidikan Biologi Indonesia Biology, Medicine, & Natural Product Chemistry Jurnal Florea Jurnal Edukasi Matematika dan Sains PEDAGO BIOLOGI Jurnal Penelitian Pendidikan IPA (JPPIPA) Biosfer: Jurnal Pendidikan Biologi Jurnal Pengabdian Magister Pendidikan IPA Jurnal Pengabdian UNDIKMA Bioscientist : Jurnal Ilmiah Biologi Lumbung Inovasi: Jurnal Pengabdian Kepada Masyarakat Empiricism Journal Educatoria : Jurnal Ilmiah Ilmu Pendidikan Nuras : Jurnal Pengabdian Kepada Masyarakat Panthera : Jurnal Ilmiah Pendidikan Sains dan Terapan Jurnal Pendidikan dan Pengabdian Masyarakat Biosaintifika: Journal of Biology & Biology Education Sasambo: Jurnal Abdimas (Journal of Community Service)
Akhmad Sukri
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Religion Agriculture, Biological Sciences & Forestry Humanities Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Decision Sciences, Operations Research & Management Economics, Econometrics & Finance Education Environmental Science Immunology & microbiology Languange, Linguistic, Communication & Media Law, Crime, Criminology & Criminal Justice Library & Information Science Materials Science & Nanotechnology Mathematics Medicine & Pharmacology Nursing Physics Public Health Social Sciences Other

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Substitution and Haplotype Diversity Analysis on The Partial Sequence of The Mitochondrial DNA Cyt b of Indonesian Swamp Buffalo (Bubalus bubalis) Akhmad Sukri; Mohamad Amin; Aris Winaya; Abdul Gofur
Biology, Medicine, & Natural Product Chemistry Vol 3, No 2 (2014)
Publisher : Sunan Kalijaga State Islamic University & Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1514.606 KB) | DOI: 10.14421/biomedich.2014.32.59-63

Abstract

This research aims to investigate the substitution pattern of nucleotide base and haplotype diversity of Indonesian swamp buffalo (Bubalus bubalis) based on the mitochondrial DNA cyt b partial gene sequence. 17 samples were chosen from 7 different regions with each uniquely represents Indonesian biogeography which comprise Aceh, Riau, Madiun, Blitar, Lombok, South Borneo and Tana Toraja. The result of cyt b gene sequence alignment showed the presence of transition and transversion substitutions and the absence of insertion and deletion. The amount of transitions was found to be higher than that of transversions and the amount of substitution in pyrimidine was also higher than that in purine. The highest amount of transitions happened in base TàC which is a silent substitution. The result of median joining network analysis showed that Indonesian haplotype Bubalus bubalis could be classified into 16 haplotypes which form different haplogroups unique to their geographical region. The result of median joining network analysis also indicated that the genetic relationships of swamp buffaloes (Bubalus bubalis) in Indonesia are highly influenced by their geographical locations.
Co-Authors . Kholik Abdul Gofur Ade Kurniawan Adia, Muhamad Amirudin Amirudi Any Fatmawati Aris Winaya Aulia Anggraini, Aulia Ayudya Lestari Azim, Ismul Aziz, Faizul Bayani Baiq Asma Nufida Baiq Rika Ayu Febrilia Baiq Yulia Pidiawati Bq. Muli Harisanti Bq. Sri Wahyuni Dharmawibawa, Iwan Doddy Dira Permana Efendi, Ismail Elly Purwanti Emi Wahyuni Maesarah Farida Fitriani Febriani, Puput Firdaus, Laras Fitriani, Herdiyana Fuad, Ramli Gita, Yuda Gito Hadi Prayitno Gito Hadi Prayitno, Gito Hadi Gito Hadiprayitno Gito Hadiprayitno Hadi Gunawan Sakti Hajiriah, Titi Laily Harisanti, Baiq Muli Ieke Wulan Ayu Ika Nurani Dewi Indah Purnamasari Indah Purnamasari Ismail Efendi Ita Chairun Nissa Jannah, Husnul Jeffry Handhika Jono Irawan Kholik, Kholik Kusmiyati Kusmiyati Kusmiyati Kusmiyati Laksmi, Ni Wayan Maesarah, Emi Wahyuni Marheny Lukitasari Marheny Lukitasari Marheny Lukitasari Marheny Lukitasari Mariyam Al Haddar Masiah Masiah Masiah, Masiah Mhd Muhajir Hasibuan Mirawati, Baiq Mohamad Amin Munawer Pradana Nofisulastri, Nofisulastri Nur Lestari Pradana, Munawer Primawati, Sri Nopita Purnawati, Ni Komang Putra, Guyup Mahardian Dwi Riwu, Katty Hendriana Priscillia Rizka, Muhammad Arief Rusdi Hasan Safnowandi Safnowandi Safnowandi, Safnowandi Saidil Mursali Sapnowandi Sapnowandi Siti Nofiani Ulfa siti rabiatul fajri, siti rabiatul Sri Nopita Primawati Sri Utami Sri Utami Subagio Subagio Subagio Subagio, Subagio SUCIKA ARMIANI, SUCIKA Sudana, I Ketut Suharti Suharti Sukardi Sukardi Sumarjan Sumarjan, Sumarjan Suyasih, Made Syamsiyatuz Zahroatul Khoirotil U Titi Laily Hajiriah Titi Laily Hajiriah Usman Usman Usman Usman Wahyu Hidayat Wahyu Prihanta Wahyuni, Bq. Sri Wangiyana, I Gde Adi Suryawan Wildan Wildan Wulandari Wulandari