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All Journal HAYATI Journal of Biosciences Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy) Jurnal Ilmu Pertanian Indonesia Jurnal Teknologi Dan Industri Pangan Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Jurnal Veteriner Microbiology Indonesia BIOTROPIA - The Southeast Asian Journal of Tropical Biology Jurnal Pengelolaan Sumberdaya Alam dan Lingkungan (Journal of Natural Resources and Environmental Management) Jurnal Sumberdaya Hayati JURNAL BIOLOGI INDONESIA ANNALES BOGORIENSES Biosaintifika: Journal of Biology & Biology Education Menara Perkebunan Floribunda Jurnal Ilmiah Sains Annales Bogorienses
Nampiah Sukarno
Department Of Biology, Faculty Of Mathematics And Natural Sciences, IPB University, Bogor, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Computer Science & IT Earth & Planetary Sciences Economics, Econometrics & Finance Environmental Science Immunology & microbiology Industrial & Manufacturing Engineering Mathematics Medicine & Pharmacology Physics Veterinary

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Journal : Jurnal Sumberdaya Hayati

 1 
Potensi Cendawan Asal Hydrilla verticillata Sebagai Pengendali Hayati Fusarium oxysporum dan Ganoderma boninense: Fungi from Hydrilla verticillata as Potential Biological Control Agents of Fusarium oxysporum and Ganoderma boninense Astri Ariyani; Nampiah Sukarno; Sri Listiyowati
Jurnal Sumberdaya Hayati Vol. 5 No. 2 (2019)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.5.2.43-51

Abstract

Hydrilla verticillata is an aquatic weed, can build symbiosis and also become a substrate of freshwater fungi. Some of freshwater fungi that live in association with H. verticillata are pathogenic fungi which were potentially used as controller for Fusarium oxysporum and Ganoderma boninense. The use of pathogenic fungi as a biocontrol is not consistent in the field. Therefore, this research aimed to find new fungus candidates that are stronger and more consistent in controlling pathogenic fungi. Freshwater fungi were isolated from H. verticillata. Identification was based on morphological characters. Molecular analysis was carried out for freshwater fungi which had the highest inhibition percentage to pathogenic fungi. The antagonism test was conducted by dual culture method. The mechanism of interaction of hyphae was observed under a microscope. Freshwater fungi was derived from H. verticillata stem are Aspergillus section flavi, Gliomastix sp., and Talaromyces sp. Antagonism test results showed that all fungi could inhibit the growth of pathogenic fungi. Based on molecular analysis used ITS region showed Talaromyces sp. could not identify to the level of species so that additional genes were required, namely beta-tubulin gene, in order to further identify Talaromyces sp.
Isolasi Cendawan Mikoriza Arbuskula dari Rizosfer Tanaman Berkayu Asal Pulau Bangka dan Karakteristik Struktur Kultur Mikorizanya: Isolation of Arbuscular Mycorrhizal Fungi from Rhizosphere of Bangka Island Woody Plants and their Mycorrhizal Structure Culture Characteristics Nampiah Sukarno; Cici Rahmawati; Sri Listiyowati; Wendi Nurul Fadillah; Yanti Novera
Jurnal Sumberdaya Hayati Vol. 9 No. 2 (2023)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.9.2.39-48

Abstract

Arbuscular Mycorrhizal Fungi (AMF) associate with a variety of plants including forest trees. Research on AMF in forestry in Indonesia is limited, especially on woody plants grown in Bangka Island. Therefore, the aim of this research was to isolate and identify AMF associated with woody plants from Bangka Island grown in the post-mining soil in greenhouse for 7 years. The Soil samples derived from 8 pots of the 7 years old woody plants were used as spore sources. Spore extraction from the soil used the wet sieving and decanting method. Fungal identification was carried out based on morphological characteristics, and fungal isolation used pot culture with Pueraria javanica as a host plant. Fungal structures within the root were analyzed after root staining with trypan blue. There were 18 spore morphotypes observed which belong to 5 types of Acaulospora and 13 types of Glomus. Seven single spore pot cultures were successfully isolated from species of Acaulospora sp.1, Acaulospora sp.4, Acaulospora sp.5, Glomus sp.2, Glomus sp.3, Glomus sp.6, and Glomus sp.11. AM fungal colonization structures observed within the root were Paris type arbuscules, internal hyphae, and vesicles. The AMF cultures obtained could be used as biofertilizer for woody plant seedlings production for post mining reclamation activities.
Isolasi dan Identifikasi Cendawan Endofit Akar Anggrek Epifit dan Hemiepifit: Isolation and Identification of Endophytic Fungi in Epiphytic and Hemiepiphytic Orchid Root Michael Michael; Nampiah Sukarno; Sofi Mursidawati; Edhi Sandra; Nadiya Dwi Rahayu
Jurnal Sumberdaya Hayati Vol. 9 No. 4 (2023): 2023
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.9.4.152-163

Abstract

Orchids form a symbiotic relationship with endophytic fungi throughout their life cycle, including their seed germination. Research on orchid endophytic fungi in Indonesia is still limited. This study aimed to isolate and identify endophytic fungi of Phalaenopsis amabilis, Dipodium brevilabium, Vanilla planifolia, and Aerides odorata orchids. Endophytic fungi were isolated from surface-sterilized orchid root pelotons. Fungal identification was based on morphological and molecular characteristics using ITS rDNA sequences, followed by BLAST and phylogenetic tree analysis. All orchids studied had peloton structures in root cortex tissues. From the four orchids studied, 22 fungal isolates were obtained. Five fungal isolates were obtained from the P. amabilis orchid, consisting of 1 Penicillium and 4 sterile mycelium isolates. The D. brevilabium had 7 fungal isolates, namely 1 Penicillium and 6 Fusarium isolates. The V. planifolia had 6 Fusarium isolates, whereas the A. odorata had 4 isolates, such as 1 Penicillium, 2 sterile mycelium, and 1 unidentified isolate. The genus Penicillium was found in 3 out of the 4 orchid species studied. One Penicillium isolate was molecularly identified as Penicillium citrinum. Endophytic fungi in P. amabilis were mostly sterile mycelium, while D. brevilabium, V. planifolia, and A. odorata were dominated by Fusarium.
Potensi Cendawan Endofit Asal Jahe Merah (Zingiber officinale Roscoe) untuk Mengendalikan Cendawan Patogen Candida albicans In Vitro: Potency of Endophytic Fungi Isolated From Zingiber officinale Roscoe to Control Pathogenic Fungus Candida albicans In Vitro Sari, Mulya; Sukarno, Nampiah; Batubara, Irmanida; Cinta Badia Br Ginting, Rohani
Jurnal Sumberdaya Hayati Vol. 6 No. 1 (2020)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.6.1.26-32

Abstract

Endophytic fungi isolated from red ginger (Zingiber officinale) can inhibit growth of Fusarium oxysporum, but the ability of the fungi to control Candida albicans as human pathogen has not been reported. The aims of this research were to study the mechanism of ten endophytic fungi isolates derived from red ginger to control C. albicans in vitro using dual culture methode and fungal extract, and to determine fungal bioactive chemical groups produced by the fungi. Three out of ten isolates tested, Talaromyces assiutensis JMa 7, T. assiutensis JMbt 3, and Curvularia affinis JMbt 9 inhibited growth of C. albicans with inhibition zones were 4.0 mm, 4.9 mm, and 11.3 mm, respectively. The cultures of the three potential endophytic fungi were extracted by maceration method using 3 solvents i.e ethyl acetate, n-hexane and ethanol. The three isolates were grown in PDB separately for 21 days incubation. At harvest, the culture filtrate was extracted by ethyl acetate and n-hexane, while fungal mycelia were extracted by all the three solvents. Ethyl acetate extracts obtained from culture filtrate of all the three fungal isolates consistently inhibited C. albicans with inhibition zones were 2.0-3.8 mm. For n-hexane extract, however, only Talaromyces assiutensis JMbt 3 that had positive effect with inhibition zone was 2.0 mm. All extracts from mycelia did not have any effects on C. albicans. The ethyl acetate extract of T. assiutensis JMbt 3 was analysed to determine its chemical groups using visible color on thin layer chromatography (TLC). The results showed that the bioactive compounds was terpenoids, and antioxidant.
Pembersihan Isi Sel Akar dan Jenis Warna Tinta untuk Deteksi Cendawan Mikoriza Arbuskula: Clearing of Root Cell Content and Types of Ink Stain for Arbuscular Mycorrhizal Fungal Detection Sulfiah, Siti; Sukarno, Nampiah; Gunawan, Agustin Wydia
Jurnal Sumberdaya Hayati Vol. 7 No. 1 (2021)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.7.1.36-40

Abstract

Arbuscular mycorrhizal (AM) fungi form mutualistic symbiosis with root of host plant. Staining technique to detect AM fungi usually used hazardous chemical. The ink stain and vinegar were used as an alternative technique to replace trypan blue and lactic acid in root staining method. This study aimed to determine time for clearing root cell contents and ink stain type to visualize the best AM fungal structures within the root observed under light microscope. Pueraria phaseoloides var. javanica roots colonized by AM fungi were cut into 1 cm long, cleared in KOH solution and stained. Four clearing time were done vis 5, 10, 15 and 20 minutes, and four stains were used namely Shaeffer black ink, Parker Quink blue ink, blue stamp ink, and trypan blue. Twenty stained roots were taken randomly from each tratment, and observed. Root clearing process for 20 minutes showed the best result. Only Shaeffer black ink and trypan blue produced clear structure of external hyphae, internal hyphae, vesicles and arbuscules. Arbuscular structure stained only by Shaeffer black ink and trypan blue. This indicated that Shaeffer black ink could be used as an alternative stain to detect AM fungi within the root of host plant
The Effects of Root Endophytic and Arbuscular Mycorrhizal Fungi on Growth and Curcumin Content of Temulawak (Curcuma xanthorrhiza) : The Effects of Root Endophytic and Arbuscular Mycorrhizal Fungi on Growth and Curcumin Content of Temulawak (Curcuma xanthorrhiza) Putra, Sukma Triperdana; Iswantini, Dyah; Widyastuti, Utut; Fadillah, Wendi Nurul; Sukarno, Nampiah
Jurnal Sumberdaya Hayati Vol. 8 No. 2 (2022)
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.8.2.49-56

Abstract

Temulawak (Curcuma xanthorrhiza) is known to be used as ingredient in Jamu and traditionally utilized to cure a range of illness. The global market demand for the rhizome of the temulawak affecting the urgency of sustainable rizhome production. The aim of this research was to analyze the effects of root endophytic and arbuscular mycorrhizal fungi on growth and rhizome curcumin content of the temulawak. There were five fungal inoculation treatments on C. xanthorrhiza seedling grown in sterilized and unsterilized growth media. They were root endophytic fungi A. niger (A), Glomus sp. (G), combination of A. niger and AMF Glomus sp. applied at the same time (GA) and at different time (G-A) and control. The experiment was conducted under greenhouse condition. The plant growth parameters, fungal colonization, and rhizomes curcumin content were measured. The result showed that there was a significant interaction between fungal inoculation and control treatments. In general, fungal inoculation on both sterilized and unsterilized growth media increased the plant growth and rhizomes curcumin content. On the sterilized growth media, C. xanthorrhiza inoculated by A. niger showed the best growth parameter. On the other hand, the best growth parameter on the unsterilized media was showed by C. xanthorrhiza inoculated by mixed fungal inoculums. The highest amount of curcumin content was showed by C. xanthorrhiza inoculated by Glomus sp. as a single inoculation.
Isolasi dan Identifikasi Cendawan Endofit Akar Anggrek Epifit Vanda sp. dan Anggrek Terestrial Spathoglottis plicata: Isolation and Identification of Root Endophytic Fungi in Epiphytic orchid Vanda sp. and Terrestrial Orchid Spathoglottis plicata Rahayu, Nadiya Dwi; Listiyowati, Sri; Rafi, Mohamad; Sandra, Edhi; Mursidawati, Sofi; Risna; Sukarno, Nampiah
Jurnal Sumberdaya Hayati Vol. 10 No. 4 (2024): 2024
Publisher : Departemen Biologi, Institut Pertanian Bogor

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.29244/jsdh.10.4.198-204

Abstract

Endophytic fungi play an important role in the orchid lifecycle by aiding seed germination and plant development. Information on the diversity of endophytic fungi in Indonesian orchids, particularly Vanda epiphytic orchid and Spathoglottis terrestrial orchid, is still limited. This study aimed to isolate and identify endophytic fungi from the roots of Vanda sp. and Spathoglottis plicata orchids collected from Banjarbaru, South Kalimantan, and Kendari, Southeast Sulawesi. Isolation was performed using Potato Sucrose Agar (PSA) medium, and morphological identification was carried out through macroscopic and microscopic observations. A total of four endophytic fungal isolates were identified, including Nigrospora sp. and Penicillium sp. from Vanda sp. roots, and two isolates of Fusarium sp. from Spathoglottis plicata roots. The four fungal isolates obtained had aerial mycelium and septate hyphae, as well as conidia with diverse shapes. The diversity of endophytic fungi in orchid species could be influenced by the fungal affinity on the specific microhabitat conditions of each tissue and host plant species.
Co-Authors , Triadiati ADI YULANDI Agustin Wydia Gunawan Alex Hartana ALEX HARTANA Alex Hartana Anastastia Raditya Hidayanti Astri Ariyani Atit Kanti Atit Kanti Cici Rahmawati Cinta Badia Br Ginting, Rohani Dedi Fardiaz Desi Maria Panjaitan Didiek Hadjar Goenadi Dyah Iswantini Edhi Sandra Edi Guhardja Endang Sukara Eris Septiana Fachrian Hasmi Pasaribu Fachriyan Hasmi Pasaribu Fadillah, Wendi Nurul Franco, Christopher MM Hamim Hamim HAPPY WIDIASTUTI Hidayanti, Anastastia Raditya I Made Sudiana I Nyoman Pugeg Aryantha Ibnu Qayim Irmanida Batubara Kartini Kramadibrata Kemala S. Nagur L K Darusman Lady Diana Tetelepta, Lady Diana Latifah K Darusman latifah K Darusman Latifah K. Darusman Latifah Kosim Darusman Latifah Kosim Darusman LATIFAH KOSIM DARUSMAN M. Rafi M. Sukarno Mashuri Waite Mashuri Waite Maulani, Nail Izzatul Mega Putri Amelya Michael Michael Mien Ahmad Rifai Mujahidah, Shofia Mujahidah, Shofia Mulya Sari Nadia T. Hendartina Nadiya Dwi Rahayu Novriyandi Hanif Partomuan Simanjuntak Putra, Sukma Triperdana Rahayu Laelandi Rahayu, Nadiya Dwi Rahminiwati, Min Rida Oktorida Khastini Risna Riza Firmansyah Riza Zainuddin Ahmad Rohani Cinta Badia Ginting ROHANI CINTA BADIA GINTING Sally SMITH Sihegiko Kanaya SIHEGIKO KANAYA Sintho Wahyuning Ardie Soekisman Tjitrosoedirdjo Sofi Mursidawati Sofi Mursidawati Sri Listiyowati Subagya, Mahmud Sukarno Sukarno Sukmarayu P Gedoan Sukmarayu P. Gedoan Sulfiah, Siti Syaiful Anwar Utut Widyastuti UTUT WIDYASTUTI UTUT WIDYASTUTI Utut Widyastuti UTUT WIDYASTUTI Utut Widyastuti Suharsono Utut Widyastuti Suharsono† Waite, Mashuri Wei Zhang Wendi Nurul Fadillah Wendi Nurul Fadillah Yanti Novera Yasuyuki Hashidoko† Yuyun Nisaul Khairillah Za’aziza Ridha Julia