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BIOTROPIA - The Southeast Asian Journal of Tropical Biology
Published by Southeast Asian Regional Centre for Tropical Biology
ISSN : 02156334     EISSN : 1907770X     DOI : http://dx.doi.org/10.11598/btb
Core Subject : Health, Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Veterinary
BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.
Arjuna Subject : Ilmu Pertanian dan Biologi (Semua) - Ilmu Pertanian dan Biologi (Lain-Lain)
Articles 8 Documents
 1 
Search results for , issue "Vol. 25 No. 2 (2018)" : 8 Documents clear
SYSTEM DYNAMICS MODELING OF LAND USE CHANGE IN WEST KALIMANTAN, INDONESIA Pahrian Ganawira Siregar; Jatna Supriatna; Raldi Hendro Koestoer; Djoko Harmantyo
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (3410.986 KB) | DOI: 10.11598/btb.2018.25.2.792

Abstract

The main effects of human activities on the environment result in land use and land cover changes. Land over exploitation and development activities in West Kalimantan of Indonesia necessitated the focus of this research which aims to analyzing and predicting land use changes in West Kalimantan. The results of such a study assist researchers, planners and policy makers to formulate suitable land use policies in the future in order to balance economic development and natural resource conservation. Moreover, it makes Indonesia shift from middle incomes to become a developed country in 2030.  Methodology employs field observation, key informant interviews, focus group discussions and system dynamics modeling. The field observation covered communities in several locations in the study site to identify pattern of land use. The system dynamics was applied to analyze the land use change system and estimate the extents of land cover change in the future. The study showed several outcomes: (i) The main leverage factors in the land use change system in West Kalimantan were the desire to reach the expected economic growth and the increased per capita consumption of edible oil globally; (ii) In the business as usual modeling, the increasing global demand  for edible oil will lead to significant increment of oil palm plantation area, even the total area of plantation could be wider compare to that of the remaining forest area by 2030; (iii) Key interventions that need to be considered in the future is to conduct reforestation (with reforestation rate of at least 0.5% per year) and limited oil palm plantation development to maximum of 50% of developed  area.
ASSESSMENT OF SEEDLING ABUNDANCE, SURVIVAL AND GROWTH OF TWO DIPTEROCARP SPECIES IN PEAT SWAMP FORESTS OF BRUNEI DARUSSALAM Hazimah Haji Mohd Din; Nor Basirah Bakiri; Rahayu Sukmaria Sukri; Faizah Haji Metali
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (597.125 KB) | DOI: 10.11598/btb.2018.25.2.805

Abstract

Dryobalanops rappa Becc. and Shorea albida Sym. are Bornean endemics of high conservation value and increasingly threatened by anthropogenic disturbances. In-situ study of seedling abundance and growth performance of these Dipterocarp species was conducted in two selected peat swamp forests of Brunei Darussalam, following a mast fruiting event in March–May 2014. Within six 6 x 6 m plots at each forest site, D. rappa seedlings at the Anduki peat swamp forest and S. albida seedlings at the Badas peat swamp forest were measured for abundance at the initial census in September 2014, as well as survival and relative growth rates (RGR) after a period of 5 months, with the final census in February 2015. We found significantly higher seedling abundance for D. rappa (1885 ± 208) than S. albida (160 ± 71). Significantly higher percentage survival was recorded for D. rappa seedlings (90.8 ± 2.2%) in comparison to S. albida seedlings (81.7 ± 2.2%). S. albida seedlings (0.24 ± 0.02 mm mm-1 month-1) showed significantly greater RGR in stem diameter than D. rappa seedlings (0.18 ± 0.02 mm mm-1 month-1), however, there were no significant differences in the RGRs based on seedling height, leaf number and biomass between D. rappa and S. albida seedlings. In terms of seedling abundance and percentage survival, D. rappa seedlings appeared to be more successful in regeneration and may potentially be used for rehabilitation of degraded tropical peat swamps and other forest types. Our results suggested that greater conservation efforts of peat swamps must be made to protect the Bornean endemic plant species, in particular S. albida.
PRODUCTION AND CHARACTERIZATION OF BIOSURFACTANTS PRODUCED BY Pseudomonas aeruginosa B031 ISOLATED FROM A HYDROCARBON PHYTOREMEDIATION FIELD Endah Retnaningrum; Wahyu Wilopo
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1295.697 KB) | DOI: 10.11598/btb.2018.25.2.808

Abstract

The biosurfactants are used by several industrial sectors such as petroleum, agriculture, food production, chemistry, cosmetics, and pharmaceuticals. Because of their hydrophobic and hydrophilic moieties, they have potency to reduce surface tension, interfacial tension between water-hydrocarbon systems, and low micelle concentration. Their characteristics strongly depend on the producer strain as well as on the medium composition, such as carbon and nitrogen sources. This study was conducted to investigate the influence of different sources of carbon (n-hexadecane, glycerol and glucose) and nitrogen (urea, NH4Cl and NaNO3) for the production of biosurfactants by a new strain of Pseudomonas aeruginosa B031 isolated from a rhizosphere of Paraserianthes falcataria L. Nielsen, a hardwood plant species at a phytoremediation field. The biosurfactant characteristics of the strain were evaluated, particularly its surface-active properties and potential to remove hydrocarbon. Glycerol was found to be the optimum carbon source, with rhamnose concentration, emulsification index, and critical micelle concentration (CMC) of 718 mg/L, 37%, and 35 mN/m, respectively. NaNO3 was observed as the optimum nitrogen source, with rhamnose concentration, emulsification index, and CMC of 290 mg/L, 30%, and 24 mN/m, respectively. These biosurfactants efficiently reduced surface tension of culture broth from 42 mN/m to 31 mN/m for the glycerol treatment and from 37 mN/m to 24 mN/m for the sodium nitrate treatment. The crude biosurfactants from the glycerol and sodium nitrate treatments also removed 87.5% and 84%, respectively, of crude oil from sand. These rates were higher than those of the chemical surfactants (SDS and Triton X-100). These findings indicate that the biosurfactants produced by the strain from both glycerol and NaNO3 treatments can efficiently decrease the interfacial tension of culture broth dilution and have a high emulsion index, thus hold promise in hydrocarbon bioremediation application.
RESISTANCE AGAINST Aeromonas hydrophila INFECTION AND GROWTH OF SECOND GENERATION (F2) AFRICAN CATFISH [Clarias gariepinus] USING SELECTED MOLECULAR MARKERS Alimuddin Alimuddin; Fadhila Maharani Putri; Dinamella Wahjuningrum; Dian Hardiantho; Ade Sunarma; Sri Nuryati
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1246.846 KB) | DOI: 10.11598/btb.2018.25.2.742

Abstract

Aeromonas hydrophila is a pathogenic bacteria that causes mass mortality in catfish. In previous studies, specific pathogen resistant (SPR), A. hydrophila-resistant African catfish first generation (F1) has been cultivated by marker assisted selection using the major histocompatibility complex (MHC) 1 as a molecular marker. In this study, growth performance, inheritance of the MHC DNA marker in the second generation (F2) of catfish and disease resistance against A. hydrophila infection were observed.  The F2 progenies were produced by crossing F1 fish between themselves. Nursery was performed in 80-L glass aquaria, 4 replications for each cross, at the same initial density, for 2 months of rearing. The results showed that daily growth rate of F2 progenies from the SPR broods was significantly higher than those from broods without the marker.  Results of the PCR analysis showed that average number of F2 progenies from SPR broods carrying the MHC marker was about 91% higher than that of control.  After the fish reached about 12 cm body length, they were challenged by intramuscularly injecting of 0.1 mL A. hydrophila (LD50: 106 CFU ml-1) for 7 days. Results of challenge test showed that survival of F2 offspring from the crosses of SPR broods (77.2%) was about two times higher than those from brood without MHC marker (38.3%).  Differential leukocyte count supported the high resistance of F2 progenies from F1 broods having MHC I marker against A. hydrophila infection. In conclusion, African catfish farming carrying MHC marker potentially have higher productivity and reduces fish lose due to infection by A. hydrophila.
IDENTIFICATION OF ENDOPHYTIC BACTERIA FROM Curcuma zedoaria BASED ON PROTEIN PROFILE USING MALDI-TOF MASS SPECTROMETRY Tri Ratna Sulistiyani; Puspita Lisdiyanti
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2018.25.2.795

Abstract

Valid identification of microorganisms is a vital information to establish culture collections. Currently, molecular approach based on 16S rDNA is widely used for bacterial identification. This approach  is however, time consuming and expensive. Matrix assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS) allows the identification of microorganisms directly from colonies and it only takes some few minutes. The interest of this study was to identify endophytic bacteria associated with Curcuma zedoaria based on protein profile using MALDI-TOF MS system and compare with 16S rDNA sequence results. Endophytic bacteria were isolated from part of medicinal plant C. zedoaria collected from Bogor, West Java Indonesia. The identification of selected bacteria was performed by protein profile using MALDI-TOF MS. A total of 66 endophytic bacteria from C. zedoaria plant, were selected for identification. The result of MALDI-TOF MS analysis showed that eleven isolates (16.67%) were correctly identified to the species level and 23 isolates (34.85%) matched on genus level of molecular approach. These results demonstrates that the MALDI-TOF system is suitable and feasible approach for the bacterial identification, mainly for screening and grouping of large number isolates.
FLORA DIVERSITY, COMPOSITION AND ECOLOGY IN BESIQ BERMAI TROPICAL FOREST OF DAMAI DISTRICT, EAST KALIMANTAN Siti Sofiah; Destario Metusala; Trimanto Trimanto; Siti Nurfadilah
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2018.25.2.724

Abstract

Besiq Bermai Forest is part of Kalimantan forests known for vast plant diversity. The present study aimed to investigate flora diversity, composition, and ecology in Besiq Bermai Forest to support the management of biodiversity and forest conservation. Thirteen plots were established with different sizes of plots (100 m x 20 m plots for trees; 40 m x 5 m plots for saplings; and 5 m x 5 m plots for understory). Data recorded included plant species name and individual number of each plant species. Data analysed were Shannon-Wiener diversity index, Relative Density, Relative Frequency, Relative Dominance and Important Value Index. The principal component analysis (PCA) was performed to determine relationship between edaphic components and flora occurrence. The results showed that there were 93 species of trees (belonging to 48 genera and 22 families), 112 species of saplings (belonging to 62 genera and 43 families), and 48 species of understory (belonging to 28 genera and 20 families). Shannon-Wiener diversity index (H’) were 6.05, 6.25 and 3.26 for tree, saplings and understory, respectively. The most common family for tree and saplings in the forest ecosystem in this area was Dipterocarpaceae (Shorea spp). Species of tree with the highest importance value index were Dillenia excelsa, Syzygium sp. and Shorea parvifolia. The highest importance value index for species of saplings were Macaranga triloba and Shorea parvifolia; and for species of understory were Phrynium jagorianum. Ecological (edaphic) factors affecting the occurence and establishment of flora in Bermai forest were total N and C/N ratio. The present study has implication for the management of biodiversity and forest conservation.
ISOLATION, CHARACTERIZATION AND MOLECULAR IDENTIFICATION OF MYXOBACTERIA FROM TWO OUTERMOST ISLANDS OF INDONESIA Siti Meliah; Puspita Lisdiyanti
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2018.25.2.796

Abstract

Myxobacteria are Gram negative bacteria commonly found in soil, tree bark, and decay wood. These bacteria have unique social behaviors by forming fruiting bodies, moving by gliding motility and preying on other microorganisms. The research was conducted to isolate, characterize, and identify indigenous myxobacteria from Sumba and Papua Islands of Indonesia as a preliminary step to utilize their potential in the pharmaceutical industry. Myxobacteria were isolated using filter paper and baiting with Escherichia coli to obtain cellulolytic and bacteriolytic myxobacteria, respectively. Characterization of myxobacteria was performed with Gram staining, observation on pigmentation, morphology of vegetative cells, fruiting bodies, and myxospores. Molecular identification was conducted based on 16S rRNA gene sequence analysis. A total of 10 myxobacterial strains were successfully isolated and purified. All isolates obtained were Gram negative, rod shaped with yellow or orange pigmentation. Fruiting bodies observed contained spherical myxospores. Molecular identification of these bacterial strains showed that they belong to myxobacteria from suborder Cystobacterineae, namely Myxococcus fulvus, Myxococcus stipitatus, and Melittangium lichenicola. To our knowledge, this is the first record of their occurrence in Indonesia.
GROWTH PERFORMANCE AND ENZYME ACTIVITIES IN CATFISH [Pangasianodon hypophthalmus] FED WITH WATER HYACINTH-BASED DIET Dewi Yuniati; Nur Bambang Priyo Utomo; Mia Setiawati; Alimuddin Alimuddin
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 25 No. 2 (2018)
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.2018.25.2.840

Abstract

An alternative subtitution of pollard as an imported feed ingredient is a neccesity and one of the potential ingredients is water hyacinth (Eichhornia crassipes). This study was conducted to evaluate growth performance and enzyme activity in catfish (Pangasianodon hypophthalmus). Diet with five different levels of water hyacinth subtitute of pollard (0%, 25%, 50%, 75%, and 100%) were fed to catfish for 60 days. Seventy (70) catfish fry with average initial body weight of 2.45±0.15 g were maintained in 100cm x 80cm x 60cm aquaria. Fish fed at satiation level three times daily at 8 am, 12 pm, and 4 pm. With dietary of 25% water hyacinth, growth performance and protease activity similar to 0% treatment. Feed intake, protein digestibility, feed efficiency, protein efficiency ratio, and protease and amylase enzyme activities decreased (p<0.05) in those fed with more than 25% water hyacinth. Catfish fed 25% water hyacinth showed significantly (p<0.05) higher daily growth rate, feed efficiency and protein digestibility than those with other treatments. Based on the growth performance and enzyme activity, we can conclude that the optimum dietary level of water hyacinth subtitute pollard for fry catfish is 25%.

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