ANNALES BOGORIENSES
Vol 18, No 2 (2014): Annales Bogorienses

Isolation and Characterization of OsNAC6 cDNA from Rice (Oryza sativa L.) cv. Nipponbare, Batutegi, and Rojolele

Agus Rachmat (Research Center for Biotechnology, Indonesian Institute of Sciences, Indonesia Plant Breeding and Biotechnology Program, IPB Graduate School, Bogor Agricultural University, Indonesia)
Satya Nugroho (Research Center for Biotechnology, Indonesian Institute of Sciences, Indonesia)
Dini Nurdiani (Research Center for Biotechnology, Indonesian Institute of Sciences, Indonesia)
Maria Swastika (Research Center for Biotechnology, Indonesian Institute of Sciences, Indonesia)
Dewi Sukma (Plant Breeding and Biotechnology Program, IPB Graduate School, Bogor Agricultural University, Indonesia)
Hajrial Aswidinnoor (Plant Breeding and Biotechnology Program, IPB Graduate School, Bogor Agricultural University, Indonesia)
Sudarsono Sudarsono (Department of Agronomy and Horticulture, Faculty of Agriculture, Bogor Agricultural University, Indonesia)



Article Info

Publish Date
18 Dec 2014

Abstract

Transcription factors have an important function in regulating gene expression and plant responses to stresses. The ERF, bZIP, WRKY, MYB, and NAC are stress inducible transcription factors. The OsNAC6 is a member of the NAC transcription factor family in rice and its expression is induced by abiotic stresses, wounding and blast disease. Characterization of OsNAC6 gene sequences would give a better undersanding on how OsNAC gene functions biologically. The objectives of this research are to isolate the OsNAC6 cDNA from Nipponbare, Batutegi, and Rojolele cultivars, to characterize their DNA sequences, and to compare their sequences to other NAC genes from other plants available in GenBank DNA databases. Isolated cDNA and sequencing of the fragments resulted in a 912 bp DNA sequences. Translation of the sequences yielded a protein consisted of 303 amino acid residue. Blast analysis of amino acid sequences indicated identity of isolated cDNA from three Indonesian rice cultivars are the OsNAC6 gene. Deduced amino acid residues from amplified cDNAs of Nipponbare, Batutegi, and Rojolele cultivars shared 100% sequence identities to rice OsNAC6 (Acc. # BAA89800), 71-100% sequence identity to a number of OsNAC protein from Oryza sativa and 63-83% sequence identity to NAC protein from other plants.

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Journal Info

Abbrev

annales

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Immunology & microbiology Medicine & Pharmacology

Description

The Annales Bogorienses (ISSN: 0517-8452, E-ISSN: 2407-7518) is a peer-reviewed Journal that is published biannually. First published in 1955, it is now one of the oldest scientific journal in the nation. The Annales Bogorienses publishes original articles in basic and applied research as well as ...