Scientific Journal of Informatics
Vol 8, No 1 (2021): May 2021

In Silico Molecular Docking Analysis of Limonene with The Fat Mass and Obesity-Associated Protein by Using Autodock Vina

Ahmed, Muhammad Zeeshan (Unknown)
Hameed, Shahzeb (Unknown)
Ali, Mazhar (Unknown)
Zaheer, Ammad (Unknown)



Article Info

Publish Date
10 May 2021

Abstract

Purpose: This study aimed to predict the binding affinity, orientation, and physical interaction between limonene and fat mass and obesity-associated protein. Methods: The mechanism of limonene and protein association was explored by molecular docking, a bioinformatic tool. The association results were compared with the reported results of the anti-obesity drug such as orlistat and with the flavonoids. AutoDock Vina tools were used for the molecular docking of limonene with fat mass and obesityassociated protein. PyMol and Discovery Studio Visualizer was used to visualize the results of this docking. Result: The binding affinity of limonene was higher (Least negative G) than the orlistat and flavonoids such as Daidzein, Exemestane, Kaempherol, Letrozole, And Rutin. Novelty: In this study, the limonene can alleviate obesity by interacting with the fat mass and obesity-associated protein. This inhibitory interaction was more significant as compared to other reported phytochemicals and drugs. Keywords: AutoDock Vina, Binding Affinity, Limonene, Molecular Docking. 

Copyrights © 2021






Journal Info

Abbrev

SJI

Publisher

Subject

Computer Science & IT

Description

Scientific Journal of Informatics published by the Department of Computer Science, Semarang State University, a scientific journal of Information Systems and Information Technology which includes scholarly writings on pure research and applied research in the field of information systems and ...