JOIV : International Journal on Informatics Visualization
Vol 4, No 3 (2020)

Feature Selection Techniques for Selecting Proteins that Influence Mouse Down Syndrome Using Genetic Algorithms and Random Forests

Fiqhri Mulianda Putra (Department of Computer Science, Faculty of Mathematics and Natural Sciences, Bogor Agricultural University, 16680, Indonesia)
Fadhlal Khaliq Surado (Department of Computer Science, Faculty of Mathematics and Natural Sciences, Bogor Agricultural University, 16680, Indonesia)
Global Ilham Sampurno (Department of Computer Science, Faculty of Mathematics and Natural Sciences, Bogor Agricultural University, 16680, Indonesia)



Article Info

Publish Date
30 Sep 2020

Abstract

Feature selection technique is a technique to reduce data dimensions which are widely used to find the set of features that best represent data. One area of science that often applies this technique is bioinformatics. An example of its application is the selection of significant proteins in the case of Down syndrome. To find out the most influential protein, experiments were carried out on normal mice with trisomy rats (down syndrome mice) totaling 1080 sample and obtained 77 levels of protein expression. The analysis carried out was divided into three groups. Each group was searched for the most influential proteins using genetic algorithms with fitness calculations using random forest algorithms. The results of the protein selection of the three data groups indicate the relationship of the selected proteins to the improvement of learning ability and memory. The results of evaluating selected protein models show a high degree of accuracy, which is above 98.7% for each data group.

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Journal Info

Abbrev

joiv

Publisher

Subject

Computer Science & IT

Description

JOIV : International Journal on Informatics Visualization is an international peer-reviewed journal dedicated to interchange for the results of high quality research in all aspect of Computer Science, Computer Engineering, Information Technology and Visualization. The journal publishes state-of-art ...