Microbiology Indonesia
Vol. 10 No. 1 (2016): March 2016

Detection of Hepatitis B Virus X Gene Mutation from Local Clinical Samples

ANITA ARTARINI (Unknown)
HANARY G JESSICA (Unknown)
RADEN RINI KARTIKASARI (Unknown)
CATUR RIANI (Unknown)
DEBBIE S RETNONINGRUM (Unknown)



Article Info

Publish Date
16 Jun 2016

Abstract

Hepatitis B virus (HBV) belongs to the Hepadnaviridae family and it infects hepatocytes, which is the most common cell in liver. HBV infection is distinguished into acute and chronic infection based on the duration of infection. Chronic infection of HBV exists more than six months and it can develop into liver cirrhosis and hepatocellular carcinoma (HCC). The development of chronic HBV infection is affected by viral particle load, genotype and subgenotype, as well as its association with HBV X gene mutation. The aim of this study is to determine the genotype and subgenotype based on X gene, and to detect its mutation. The X gene in DNA samples was amplified with nested PCR, which produced two fragments with size of 469bp and 395bp. The DNA sequencing results of the amplified product were analyzed by BLAST program to determine their HBV genotype and subgenotype based on the X gene sequences. The analysis showed that patients were infected mainly by HBV subgenotype B3, which are common in Indonesia. The obtained HBx gene sequences were aligned with HBx gene sequences from database to determine the genotype, subgenotype and amino acid substitution. In this study, we described the presence of known HCC-related HBx mutant, i.e. V5L, A47T, I127T and K130M/V131I, as well as new HBx mutant, i.e. G22S and A85T. The presence of HBx T118N mutant was detected at the highest percentage and occurred from samples with high HBV DNA titer. 

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Journal Info

Abbrev

mionline

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Immunology & microbiology Medicine & Pharmacology

Description

Microbiology Indonesia provides a unique venue for publishing original researches in microbiology (espesially from Indonesian reseachers), and ensures that authors could reach the widest possible audience. Microbiology Indonesia publishes a wide range of research disciplines on bacteria, archaea, ...