Walisongo Journal of Chemistry
Vol 5, No 2 (2022): Walisongo Journal of Chemistry

Quantitative Relationships Between Structure and Activity of Gamma-Carboline Derivative Compounds as Anti-Bovine Viral Diarrhea Virus (BVDV) Using Semi-Empirical AM1 Method

Mutista Hafshah (Department of Chemistry, Faculty of Science and Technology, Universitas Islam Negeri Walisongo Semarang)
Irvan Maulana Firdaus (Boarding School Al Irsyad Al Islamiyyah Purwokerto, Central Java, Indonesia)
Suratno Suratno (Department of Pharmacognosy, Semmelweis University, Budapest)



Article Info

Publish Date
25 Dec 2022

Abstract

This research aims to study the quantitative structure and activity relationship (QSAR) of gamma-carboline derivative compounds as anti-BVDV agents to get an equation that can predict the value of the anti-BVDV activity of gamma-carboline derived compounds. The research material is experimental EC50 data that convert to anti-BVDB activity. 14 gamma-carboline derivative compounds are divided into 2 groups, namely, 11 fitting compounds and 3 test compounds. QSAR analysis is based on multilinear regression calculations of the fitting compound by plotting the EC50 log as the dependent variable and the descriptor as the independent variable. The used descriptors are atomic net charge (q) and dipole moment (µ), which are involved in calculations using the AM1 semiempirical quantum mechanics method. In addition, the partition coefficient of n-octanol/water (Log P), molecular polarizability (α), molecular weight (BM), Van Der Waals surface area (A vdw), Van Der Waals volume (V vdw), and index of refraction (RD) are obtained from QSAR properties. The resulting QSAR equation is: Log pEC50 = -48.670 – 124.801 (qC11) – 12.661 (α) – 0.918 (µ) – 0.876 (RD) – 0.999 (Log P) + 1.863 (BM) + 0.043 (V vdw) with n = 14; r = 0.937; r2 = 0.878; SD = 0.244; Fcount/Ftable = 1.466; PRESS = 0.749; Sig. = 0.02 This equation can be used as an initial guide for designing the structure of new compounds of the gamma-carboline class by considering some of the most influential descriptors. Consequentially, new compounds can be designed that have a smaller predicted EC50 value than the known compounds derived from gamma-carboline.

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Journal Info

Abbrev

wjc

Publisher

Subject

Chemistry

Description

Walisongo journal of chemistry is a peer reviewed and open access journal published by Chemistry Department, faculty of Science and Technology, UIN Walisongo Semarang. This journal covering all areas of chemistry including inorganic, organic, physic, analytic, biochemistry, and environmental ...