Journal of Molecular Docking
Vol. 2 No. 1 (2022): Journal of Molecular Docking

Comparative In-Silico Molecular Docking of Silymarin for SARS-CoV-2 Receptor

Michael Antony Samy Amutha Gnana Arasi (The Tamil Nadu Dr. M.G.R. Medical University)
Sapthasri Ravichandran (The Tamil Nadu Dr. M.G.R. Medical University)
Irudayam Iayaraman (Anna University)



Article Info

Publish Date
30 Jun 2022

Abstract

The COVID-19 pandemic has spread worldwide in over 185 countries, with millions of infections and hundreds of thousands of deaths. The current pandemic has made the situation worse, forcing the development of better treatment. In this work, the binding ability of COVID-19 receptors with silymarin has been analyzed using AutoDock 1.4.6. Further, it is compared with the standard drug remdesivir. Silymarin, a potential phytochemical compound obtained from the seeds of the Silybum marianum (milk thistle) plant, has been documented as an antiviral agent against several viruses. So silymarin can also be an effective compound in the treatment of COVID-19. This study aims to determine the binding ability of COVID-19 receptors towards silymarin and further comparative analysis by remdesivir. Drug Discovery Studio version 2021 software was used to analyze ligands and targets. AutoDock 1.4.6 software was used to perform the docking study. Among the various receptors, 5N11 (Human beta1-coronavirus (β1CoV) OC43), 7MJP (SARS-CoV-2 receptor binding domain in complex with neutralizing antibody COVA2-39), 7JMO (SARS-CoV-2 receptor-binding domain in complex with neutralizing antibody COVA2-04) receptors showed the highest binding ability of -8.09, -7.23, -6.96 kcal/mol towards silymarin compared to the standard remdesivir having the docking score of -5.21, -3.76, -2.97 kcal/mol, respectively. By the comparative analysis, silymarin has a better and highest binding ability.

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Journal Info

Abbrev

jmd

Publisher

Subject

Medicine & Pharmacology

Description

Journal of Molecular Docking is an international scientific platinum open access journal managed by the Department of Pharmacy, Universitas Muhammadiyah Palangkaraya and published two times a year in June and December by Institute for Researches and Community Services Universitas Muhammadiyah ...