Greensphere: Journal of Environmental Chemistry
Vol 3, No 2 (2023): Volume 3 Issue 2 Tahun 2023

Evaluation of pH Effect on Conformation of Protein Interaction E-Cadherin…ADTC5 Complex: Molecular Dynamic Simulation

Royhanshah, Moch Freskha Fauzi (Unknown)
Anam, Khairul (Unknown)
Hudiyanti, Dwi (Unknown)
Siahaan, Parsaoran (Unknown)



Article Info

Publish Date
05 Jan 2024

Abstract

Abstract. Blood Brain Barrier (BBB) is a barrier located in the brain that controls the delivery of peptide drug to the brain. The difficulties of delivering drugs through BBB is because of E-Cadherin…E-Cadherin interaction that prevent drugs to pass through. ADTC5 has shown positive results to improve drug delivery through the BBB by modulating E-Cadherin…E-Cadherin interaction. Conformation are one of the factors that can affect the modulation stability between E-Cadherin…ADTC5. To analyze the conformation and stability of E-Cadherin…ADTC5 complex throughout the simulation time with pH effect, Molecular Dynamic (MD) method was used to simulate the conformational changes. The results indicate that pH 7.4, E-Cadherin…ADTC5 is the most stable conformation, with the lowest maximum radius gyration value 28.906 Å and the lowest ΔG Binding -168.244 kJ/mol. In the other hand, the most unstable conformation can be seen at pH 2.4, indicated by the positive ΔG Binding values 51,802 kJ/mol, high RMSD average at 2.8 Å and high RMSF fluctuations on residues. 

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Journal Info

Abbrev

gjec

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Chemistry

Description

Greensphere: Journal of Environmental Chemistry adalah Jurnal yang diterbitkan oleh Departemen Kimia, Universitas Diponegoro Semarang. Jurnal ini terbit 2 kali dalam setahun pada bulan Mei dan November. Jurnal Greensphere: Journal of Environmental Chemistry mempubliksikankan hasil penelitian dan ...