Biosaintifika: Journal of Biology & Biology Education
Vol. 17 No. 1 (2025): April 2025

Comparison of Two Isolation Methods for Naturally Preserved DNA in Ambergris

Fathurahman, Fabian Rizky (Unknown)
Suman, Ali (Unknown)
Mahmoud, Hanan Hassan Alsheikh (Unknown)
Nuryanto, Agus (Unknown)



Article Info

Publish Date
20 Apr 2025

Abstract

DNA extraction is a fundamental initial step in numerous molecular research studies. Different extraction methods are required for different biological samples to obtain high-quality DNA. Therefore, this step is one of the limiting factors for the success of molecular analysis. There has been no research evaluating an appropriate method to extract DNA from ambergris jetsam samples. This study aims to determine an appropriate method for extracting DNA from whale ambergris samples. The ambergris sample was collected from the southern coast of Cilacap. DNA extraction was performed using a commercial DNA isolation kit and the Chelex® 100 method. The extracted DNA was visualized using agarose gel electrophoresis followed by quantification with a UV Nanodrop spectrophotometer. The data were analyzed descriptively to determine the most effective extraction method. The success of the extraction was also assessed by measuring the DNA concentration using the Nanodrop spectrophotometer. The results showed that the commercial isolation kit failed to produce genomic DNA from whale ambergris, as indicated by the absence of stained DNA bands on the agarose gel. In contrast, the Chelex® 100 method successfully produced genomic DNA from ambergris, as evidenced by the presence of stained DNA bands on the agarose gel and a high quantity of genomic DNA after a Nanodrop measurement. It can be concluded that the Chelex® 100 method is more suitable than commercial kits for extracting DNA from ambergris samples. This finding contributes to the development of various scientific fields based on molecular data by providing evidence that each biological sample requires an appropriate method to obtain high-quality DNA.

Copyrights © 2025






Journal Info

Abbrev

biosaintifika

Publisher

Subject

Agriculture, Biological Sciences & Forestry

Description

Biosaintifika: Journal of Biology & Biology Education {PISSN 2085-191X| EISSN 2338-7610} published scientific papers on the results of biology and biology education research {see Focus and Scope}. Editor accepts the article has not been published in other media with the writing format as listed on ...