Jurnal Bios Logos
Vol. 15 No. 1 (2025): JURNAL BIOS LOGOS

In Silico Study Of Natural Bioactive Compounds As Potential Anti-Mpox Through Molecular Docking On D13 Protein

Anastasia Maria Angelica Montolalu (Medical Education Study Program, Faculty of Medicine, Sam Ratulangi University, Manado)
Angelina Stevany Regina Masengi (Department of Pharmacology and Therapeutics, Faculty of Medicine, Sam Ratulangi University, Manado)
Jimmy Posangi (Department of Pharmacology and Therapeutics, Faculty of Medicine, Sam Ratulangi University, Manado)
Trina Ekawati Tallei (Department of Biology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University, Manado)
Fatimawali (Medical Education Study Program, Faculty of Medicine, Sam Ratulangi University, Manado)
Christi Diana Mambo (Department of Pharmacology and Therapeutics, Faculty of Medicine, Sam Ratulangi University, Manado)
Dian Augina Rintibulawan Rambulangi (Department of Biology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University, Manado)



Article Info

Publish Date
30 Mar 2025

Abstract

Mpox is a zoonotic disease caused by Monkeypox virus (MPXV), with a surge in cases posing a major challenge due to the unavailability of specific antivirals. Indonesia's biodiversity offers great opportunities for the exploration of bioactive compounds from natural materials as therapeutic alternatives, especially by targeting the D13 protein, which is an essential structural protein in MPXV. This study aims to evaluate the interaction and affinity of molecular tethering of bioactive compounds to D13 protein and analyse the physicochemical, pharmacokinetic and toxicity profiles of the compounds. The research was conducted using molecular tethering method using Gnina software on Google Colab platform. Antiviral activity prediction was performed using PASS Online, followed by Lipinski's Rule of Five (RO5) evaluation and pharmacokinetic and toxicity analysis using SwissADME and pkCSM. The results showed that the tested bioactive compounds had good potential antiviral activity and fulfilled the RO5 criteria. Pharmacokinetic and toxicity analyses indicated good pharmacokinetic profiles but poor metabolic profiles, with predicted low toxicity levels, supporting the feasibility of these compounds to be further developed as therapeutic candidates. In addition, the bioactive compound showed the ability to interact with D13 protein with the best affinity tethering value of myricetin with a free binding energy (ΔG) value of -8.37 kcal/mol, making it a potential candidate as an antiviral for Mpox.

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Journal Info

Abbrev

bioslogos

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Medicine & Pharmacology

Description

JURNAL BIOS LOGOS is the journal published by Department of Biology, Faculty of Mathematics and Natural Sciences, Sam Ratulangi University. The aims of the journal are to publish original research papers and article review in biology science i.e. botany, zoology, molecular biology, microbiology, ...