Helium: Journal of Science and Applied Chemistry
Vol. 5 No. 1 (2025): Helium: Journal of Science and Applied Chemistry

The Potential of Isoniazid Derivatives as Anti-Tuberculosis Drugs targeting 6MA8: In Silico Study

Muhammad Yogi Saputra (Department of Chemistry, Faculty of Science, Institut Teknologi Sumatera, Indonesia)
Atthar Luqman Ivansyah (Master's Program in Computational Science, Faculty of Mathematics and Natural Sciences, Institut Teknologi Bandung)
Nabila Aprilia Maharani (Department of Chemistry, Faculty of Science, Institut Teknologi Sumatera, Indonesia)
Rahmat Kurniawan (Department of Chemistry, Faculty of Science, Institut Teknologi Sumatera, Indonesia)
Refsya Azanti Putri (Department of Pharmacy, Faculty of Science, Institut Teknologi Sumatera, Indonesia)
Irham Fauzi Abshar (Research Center Unit, PT Kimia Farma Tbk, Indonesia)



Article Info

Publish Date
07 Jul 2025

Abstract

Tuberculosis (TB) is a contagious disease caused by Mycobacterium tuberculosis. Isoniazid, a synthetic antimicrobial agent, remains one of the most crucial first-line medications in TB therapy. Enhancing TB treatment strategies can be achieved through structural modifications of existing drugs. This study investigates the potential of isoniazid derivatives as anti-tuberculosis agents targeting the CYP3A4 protein complexed with a small-molecule inhibitor (PDB ID: 6MA8) and evaluates their toxicity profiles using in silico methods. The ligands analyzed include isoniazid derivatives 1–5, with isoniazid as a reference compound and protoporphyrin as the native ligand. The structure of ligands was prepared using Avogadro software and optimized with ORCA software. The crystal structures of 6MA8 were retrieved from the PDB database and further validated using YASARA. In silico methods such as molecular docking and ProTox prediction were employed to evaluate the potential of these isoniazid derivatives as anti-TB drugs. The interactions were visualized using Biovia Discovery to assess the interaction between the isoniazid derivatives and the receptor. The results showed derivative 4 exhibited the lowest binding affinity (-71.56 kcal/mol) compared to isoniazid (-65.90 kcal/mol), derivative 1 (-63.65 kcal/mol), derivative 2 (-67.01 kcal/mol), derivative 3 (-67.37 kcal/mol), derivative 5 (-69.02 kcal/mol), and native ligand (-182.68 kcal/mol). Biovia Discovery Studio simulations indicated that the isoniazid derivatives interacted with 6MA8 via conventional hydrogen bonds, carbon-hydrogen bonds, and other interactions. The toxicity analysis showed that the derivatives had safe LD50 values, supporting their safety profiles. These results suggest that isoniazid derivatives have promising potential as anti-tuberculosis agents targeting 6MA8.

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Journal Info

Abbrev

he_jsac

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Chemistry Environmental Science Materials Science & Nanotechnology

Description

Helium: Journal of Science and Applied Chemistry is a peer-reviewed journal on chemistry that encompasses all branches of chemistry (Analytical Chemistry, Biochemistry, Physical Chemistry, Inorganic Chemistry, and Organic Chemistry) and applied chemistry (Material Chemistry, Environmental Chemistry, ...