Journal of Information Systems and Informatics
Vol 7 No 4 (2025): December

Empirical Evaluation of Decentralized Genomic Data Computation Using Bacalhau and IPFS

Triaji, Bagas (Unknown)
Badiyanto, Badiyanto (Unknown)
Afif, Justivan Intifadhah (Unknown)



Article Info

Publish Date
18 Dec 2025

Abstract

Large-scale genomic analysis typically relies on centralized infrastructures, creating conflicts between collaborative needs and data sovereignty regulations. This study solves this dilemma by evaluating a decentralized architecture designed to facilitate secure, inter-institutional genomic computation without moving raw data. We integrated Bacalhau for orchestration and IPFS Cluster with CRDT consensus for storage, employing AES-256 encryption. A quantitative evaluation was conducted on AWS using five t3.medium nodes to simulate a resource-constrained hospital network. We tested three scenarios: a centralized baseline (SSH+SCP), an ideal decentralized workflow, and a "chaos" scenario involving active network fault injection. While the centralized baseline was the fastest (Mean=37.69s), the decentralized architecture incurred a manageable ~30% overhead under ideal conditions (Mean=49.22s, SD=1.58s). Critically, under chaos fault injection, although execution time increased to 90.67s (SD=17.84s), the system achieved a superior 100% job completion rate compared to the fragile baseline. This research quantifies the trade-off between execution speed and system resilience in a healthcare context. We demonstrate that this architecture prioritizes data sovereignty and high availability over raw speed, offering a proven model for privacy-critical Decentralized Science (DeSci) collaborations.

Copyrights © 2025






Journal Info

Abbrev

isi

Publisher

Subject

Computer Science & IT

Description

Journal-ISI is a scientific article journal that is the result of ideas, great and original thoughts about the latest research and technological developments covering the fields of information systems, information technology, informatics engineering, and computer science, and industrial engineering ...