Journal of Data Insights
Vol 4 No 1 (2026): Journal of Data Insights

The AI-Enabled Pharmacovigilance for Defence Health Surveillance: Automatic Detection of Adverse Drug Events from Patient Reviews Using BioClinical ModernBERT: Farmakovigilans Berbasis AI untuk Pengawasan Kesehatan Pertahanan: Deteksi Otomatis Kejadian Efek Samping Obat dari Ulasan Pasien Menggunakan BioClinical ModernBERT

Nanang Yulian (Indonesia Defense University)
R. Djoko Andreas Navalino (Universitas Pertahanan Republik Indonesia)
Linus Yoseph Wawan Rukmono (Universitas Pertahanan Republik Indonesia)
Riduan Riduan (Universitas Pertahanan Republik Indonesia)



Article Info

Publish Date
30 Jun 2026

Abstract

Pharmacovigilance is a critical component of post-marketing drug safety, yet conventional adverse drug event (ADE) reporting systems remain constrained by substantial underreporting. In defence health systems, the timely detection of medication-related safety signals is not only a clinical concern but also a matter of force health protection, medical readiness, and operational resilience. Patient-generated health narratives from online forums, drug review platforms, and social media provide a complementary source of pharmacovigilance intelligence, but their informal, unstructured, and context-dependent nature creates significant challenges for automated analysis. This study evaluates BioClinical ModernBERT, a biomedical–clinical long-context encoder based on the ModernBERT architecture, for automatic ADE detection from patient reviews. Its performance is compared with three representative BERT-based transformer baselines: BERT-base, BioBERT, and ClinicalBERT. Experiments were conducted using the CSIRO Adverse Drug Event Corpus (CADEC), a benchmark corpus of patient-reported medication experiences from online health forums. The corpus was pre-processed through sentence segmentation, text cleaning, medical entity normalization, and sentence-level label alignment for binary ADE/non-ADE classification. All models were fine-tuned using a 70:15:15 training, validation, and test split and evaluated using accuracy, precision, recall, and F1-score. The results show that BioClinical ModernBERT achieved the highest overall performance, with an F1-score of 0.891, outperforming ClinicalBERT (0.847), BioBERT (0.832), and BERT-base (0.798). Confusion matrix analysis further indicates that BioClinical ModernBERT reduced false negative errors, particularly in long, multi-clause, and clinically implicit patient narratives. These findings suggest that combining biomedical–clinical domain adaptation with long-context representation provides a meaningful advantage for detecting ADE signals in complex patient-generated text. From a defence health perspective, such capability may support the development of AI-enabled pharmacovigilance surveillance systems that enhance medication safety, health intelligence, and readiness-oriented risk monitoring across civilian–military health ecosystems.

Copyrights © 2026






Journal Info

Abbrev

jodi

Publisher

Subject

Computer Science & IT Mathematics

Description

The Journal of Data Insights is an open access publication for peer-reviewed scholarly journals. The Journal of Data Insights focuses on the processing, analysis and interpretation of data for data-driven decisions and solutions in industry, hospitals, government and universities. All articles ...