Jurnal Ilmu dan Teknologi Kesehatan
Vol 14 No 1 (2026): September 2026

Effect of Repeatedly Used Fixative Solution on DNA Quality and PCR Amplification Success in Formalin-Fixed Paraffin-Embedded

Puji Lestari (Politeknik Kesehatan Kemenkes Jakarta III, Bekasi, Indonesia)
Ihdiyanti Rahmi Waruwu (Politeknik Kesehatan Kemenkes Jakarta III, Bekasi, Indonesia)
Burhannudin (Politeknik Kesehatan Kemenkes Jakarta III, Bekasi, Indonesia)
Dewi Inderiati (Politeknik Kesehatan Kemenkes Jakarta III, Bekasi, Indonesia)
Siti Nuryani (Politeknik Kesehatan Kemenkes Yogyakarta, Yogyakarta, Indonesia)



Article Info

Publish Date
30 Sep 2026

Abstract

Formalin-fixed, paraffin-embedded (FFPE) tissues are widely used for histological and molecular analyses. Although fixative reuse can reduce costs and waste, its effects on DNA quality and downstream molecular applications remain a concern. This study investigated the effects of reusing 10% neutral buffered formalin (NBF) on H&E staining quality, DNA quality, and polymerase chain reaction (PCR) amplification. Four fixation conditions were evaluated: fresh NBF (0x; control) and NBF reused once (1x), twice (2x), or three times (3x), with six FFPE tissue sections assessed per condition. H&E staining quality was scored by a board-certified anatomic pathologist under blinded conditions. DNA concentration and purity were measured by spectrophotometry, DNA integrity was assessed by agarose gel electrophoresis, and PCR amplification of a 565-bp albumin gene fragment was evaluated. After three cycles of fixative reuse, 83% of tissue sections retained good H&E staining quality, with no statistically significant difference from the control (p>0.05). Good DNA integrity, however, was observed only in samples fixed with NBF reused up to twice. These findings suggest that NBF reuse should be limited to two cycles when FFPE tissues are intended for DNA analysis.

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Journal Info

Abbrev

jitek

Publisher

Subject

Computer Science & IT Health Professions

Description

Jurnal Ilmu dan Teknologi Kesehatan provides a forum for publishing the novel technologies and knowledge related to the health ...