JISKa (Jurnal Informatika Sunan Kalijaga)
Vol. 11 No. 3 (2026): September 2026

Fine-Tuned Artificial Neural Network (ANN) with Explainable AI (XAI) for Classification and Interpretation of the Breast Cancer Wisconsin

Ikra Muhibban Ananta (Sunan Kalijaga State Islamic University Yogyakarta)
Hanif Amarudin (Sunan Kalijaga State Islamic University Yogyakarta)
Restu Adi Akbar (Sunan Kalijaga State Islamic University Yogyakarta)
M. Fajratul Ikhsan (Sunan Kalijaga State Islamic University Yogyakarta)
Maria Ulfah Siregar (Sunan Kalijaga State Islamic University Yogyakarta)



Article Info

Publish Date
25 Sep 2026

Abstract

Breast cancer remains one of the leading causes of cancer-related mortality among women, making early detection and accurate diagnosis essential. Although machine learning and deep learning approaches have achieved high classification performance, their interpretability and evaluation robustness remain limited. This study proposes a Fine-Tuned Artificial Neural Network (ANN) integrated with Explainable Artificial Intelligence (XAI) for breast cancer classification using the Wisconsin Diagnostic Breast Cancer (WDBC) dataset. Model evaluation was conducted using Stratified 5-Fold Cross-Validation, while optimization was performed through learning rate adjustment and early stopping. Model interpretability was analyzed using SHapley Additive exPlanations (SHAP), including summary, decision, force, and waterfall plots. Experimental results show that the baseline ANN achieved an average accuracy of 97.54%, precision of 97.82%, recall of 98.32%, and F1-score of 98.04%. The Fine-Tuned ANN improved performance, achieving 97.89% accuracy, 98.08% precision, 98.60% recall, and 98.32% F1-score, with better stability across folds. SHAP analysis identified worst area, worst radius, worst texture, and mean concave points as the most influential features. Furthermore, the ablation study indicated that the Sigmoid activation function, Adam optimizer, and learning rate of 0.01 produced the optimal configuration.

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Journal Info

Abbrev

JISKA

Publisher

Subject

Computer Science & IT Electrical & Electronics Engineering Library & Information Science

Description

JISKa (Jurnal Informatika Sunan Kalijaga) adalah jurnal yang mencoba untuk mempelajari dan mengembangkan konsep Integrasi dan Interkoneksi Agama dan Informatika yang diterbitkan oleh Departemen Teknik Informasi UIN Sunan Kalijaga Yogyakarta. JISKa menyediakan forum bagi para dosen, peneliti, ...