Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy)
Vol. 54 No. 2 (2026): Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy)

Evaluation of somaclonal variation in two rice varieties under different culture periods using morphological and genetic approaches

Rosalina Diva Aurela (Agrotechnology Study Program, Faculty of Agriculture, University of Jember, Jember 68121, East Java Province, Indonesia)
Angger Aisyah Hadiahning Gusti (Graduate School of Biotechnology, Postgraduate Program, University of Jember, Jember 68121, INDONESIA)
Aiqe Seprinanda Mubarokah (Graduate School of Biotechnology, Postgraduate Program, University of Jember, Jember 68121, INDONESIA)
Evita Nuril Aisiyah (Graduate School of Agronomy Study Program, Faculty of Agriculture, University of Jember, Jember, East Java, Indonesia)
Agung Nugroho Puspito (Graduate School of Biotechnology, Postgraduate Program, University of Jember, Jember 68121, INDONESIA)
Mohammad Ubaidillah (Agrotechnology Study Program, Faculty of Agriculture, University of Jember, Jember 68121, INDONESIA)



Article Info

Publish Date
09 Oct 2026

Abstract

Plants strive to maintain their existence and genetics through both generative and vegetative propagation. Tissue culture is one of the promising vegetative propagation methods that exploits the totipotency of plants to produce high-quality plants effectively. However, during the culture process, some anomalies often occur; one of the most common is somaclonal variation, which results from genetic mutations caused by carcinogenic hormones like 2,4-D, the genetic background of different rice varieties, and the period of the plant culture. The study was conducted using two varieties, namely the indica variety Ketan Hetam and the japonica Koshikari, each cultured on N6 medium containing the 2,4-D hormone for two, four, and six weeks. They were then regenerated in MS medium containing NAA and Kinetin. The resulting plantlets were analyzed using the RAPD method with four primers to detect the level of genetic mutation. The results of the study indicated that the indica rice variety Ketan Hitam had a lower regeneration rate than the japonica rice variety Koshihikari, particularly under treatments with longer culture periods, which may be associated with cell senescence that prevented callus regeneration into plantlets. However, Ketan Hitam exhibited greater genetic stability than Koshihikari.Keywords: genetic mutation; RAPD; tissue culture; somaclonal variation

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Journal Info

Abbrev

jurnalagronomi

Publisher

Subject

Agriculture, Biological Sciences & Forestry Economics, Econometrics & Finance

Description

Aims and Scope Aims Indonesian of Journal Agronomy (Jurnal Agronomi Indonesia), the official journal of the Indonesian Society for Agronomy, publishes primary research paper, review article, policy analysis and research notes and preliminary results in all areas of agronomy. Manuscripts could be ...