CAUCHY: Jurnal Matematika Murni dan Aplikasi
Vol 11, No 2 (2026): CAUCHY: JURNAL MATEMATIKA MURNI DAN APLIKASI

Comparing Cost-Sensitive LightGBM and TabPFN for Imbalanced Coronary Heart Disease Risk Prediction

Arfian Jauhar Himawan (Universitas Negeri Surabaya)
A'yunin Sofro (Universitas Negeri Surabaya)



Article Info

Publish Date
30 Nov 2026

Abstract

Coronary heart disease (CHD) constitutes a catastrophic non-communicable disease burden that operates as a non-natural disaster for health systems and directly threatening Sustainable Development Goal 3 (Target 3.4) on premature mortality; yet ten-year CHD risk prediction remains difficult because clinical cohorts are strongly class-imbalanced and most prior evaluations report point estimates without statistical or decision-analytic support. This study compares a fully tuned, cost-sensitive LightGBM pipeline with a zero-tuning tabular foundation model (TabPFN) on the imbalanced Framingham cohort of 4,240 records with a 15.19% event rate, under a common leakage-free protocol with validation-based threshold optimisation and an eight-scenario ablation, and evaluates the primary comparison with the DeLong test, bootstrap confidence intervals, a five-seed robustness check, calibration, and decision-curve analysis. TabPFN achieved higher discrimination, with an area under the receiver operating characteristic curve of 0.713 compared with 0.677 for the tuned ensemble (DeLong p = 0.0037), and better calibration, with a Brier score of 0.120 compared with 0.199. It also attained the best imbalance-aware detection, an F1-score of 0.380 and a Matthews correlation coefficient of 0.245, and remained superior under all five seeds, averaging 0.737 compared with 0.706. Threshold optimisation raised minority-class recall from 0.031 to at least 0.47 without resampling, and ten-predictor curation helped rather than harmed the foundation model. Shapley-based attribution yielded a transparent 0–100 score dominated by age, smoking, and blood pressure. A zero-tuning foundation model thus provides statistically significant, better-calibrated predictions than a tuned cost-sensitive ensemble, offering a scalable screening aid toward SDG 3 (Target 3.4) in resource-limited settings.

Copyrights © 2026






Journal Info

Abbrev

Math

Publisher

Subject

Mathematics

Description

Jurnal CAUCHY secara berkala terbit dua (2) kali dalam setahun. Redaksi menerima tulisan ilmiah hasil penelitian, kajian kepustakaan, analisis dan pemecahan permasalahan di bidang Matematika (Aljabar, Analisis, Statistika, Komputasi, dan Terapan). Naskah yang diterima akan dikilas (review) oleh ...