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INDONESIA
TREUBIA
Published by Lembaga Ilmu Pengetahuan Indonesia
ISSN : 00826340     EISSN : 2337876X     DOI : -
Core Subject : Education,
Education
Arjuna Subject : -
Articles 10 Documents
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Search results for , issue "Vol 42 (2015): Vol. 42, December 2015" : 10 Documents clear
EXPLORING THE DYNAMICS DURING COMMUNITY ASSEMBLY THROUGH COMMUNITY PHYLOGENETICS Hernawati, Rena Tri; Wowor, Daisy; Hubert, Nicolas
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.663

Abstract

Species diversify through speciation and accumulate in ecological community, a process known as community assembly. Relying on both evolutionary mechanisms acting at regional scale and ecological mechanisms acting at local scale, the process of community assembly results from intricate interactions among mechanisms at play across varying spatial and temporal scales. During the last decade, community assembly theory has been reconsidered in the light of evolutionary dynamics of species diversification and ecological dynamics have been formalized in an explicit spatial framework (i.e. metacommunity theory). The aims of the present review are: (1) to present the community assembly theory and the main paradigms that have been proposed, (2) to discuss how the metacommunity theory as defined an explicit spatial framework for community ecology, (3)to discuss the potential mechanisms at play during community assembly and their associated predictions, (4) to present new approaches to study community assembly based on phylogenetics approaches and discuss how they have been integrated in empirical studies.
Macrochelid mite (Acari: Gamasida) associated with dung beetles in Baluran National Pak, East Java, Indonesia Hartini, Sri; Dwibadra, Dhian; Ohara, Masahiro; Takaku, Gen
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.565

Abstract

Eight mite species of the family Macrochelidae (Acari: Gamasida) were collected from the body surface of dung beetles in Baluran National Park, East Java, Indonesia. Of these, one species, Macrocheles subwallacei sp. nov., was describe as new to science. Female of Macrocheles crispa (Berlese, 1910) was rediscribed and the male was described for the first time. The remaining six species were Neopodocinum  jaspersi (Oudemans, 1900), M. dispar (Berlese, 1910), M. hallidayi Walter & Krantz, 1986, M. entetiensis Hartini & Takaku, 2005, M. jabarensis Hartini & Takaku, 2003 and M. persimilis Hartini, Dwibadra & Takaku, 2007.Key words: Acari, Macrochelidae, dung beetles, Baluran, East Java, Indonesia
TWO NEW RECORDS OF MACTRID BIVALVES (BIVALVIA: MACTRIDAE) FROM INDONESIA Ambarwati, Reni
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.554

Abstract

The occurrence of two mactrid bivalves, Mactra (Mactra) queenslandica E.A. Smith and Heterocardia gibbosula Stoliczka, in coastal water of Sidoarjo, East Java, Indonesia is reported here. They are described and illustrated based on the local specimens collected. Previously, the distribution of M. queenslandica was reported only from northern-north-east Australia. This finding revealed that the distribution of this bivalve reaches Indonesia waters. Meanwhile, H. gibbosula is common in south-east Asian waters, however this is the first record for Indonesian waters. This result indicated that more mactrid bivalves could be discovered in Indonesian waters.
Macrochelid mites (Acari: Gamasida) from Kaimana of West Papua, Indonesia, and endemism of macrochelid mite fauna in New Guinea Island Hartini, Sri; Takaku, Gen
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.616

Abstract

As a result of our investigation in Lengguru area, Kaimana, West Papua, Indonesia, 6 species belonging to 2 genera of macrochelid mites(Acari: Gamasida: Macrochelidae) were collected from body surface of dung beetles (Scarabaeidae). Of these, one is undescribed species Macrocheles kaimanaensis sp. nov., and Macrocheles hallidayiWalter & Krantz, 1986is new record from Papua and West Papua (Indonesian parts of New Guinea Island).Male and deutonymph of Holostaspella rosichoni Hartini & Takaku, 2006 originally described from Papua were recorded for the first time. The remaining three species were M. amaliae Hartini, 2008, M. dispar (Berlese, 1910) and M. waigeoensis Hartini, 2008, which were previously collected from Raja Ampat, West Papua, and they are new to location in West Papua.       In total, 18 macrochelid species of 3 genera, including the results of the present study, have been recorded from New Guinea Island. Of these 10 species are endemic to New Guinea Island, and some are also distributed in Australia. So, macrochelid mite fauna of the island is clearly different from Indonesian fauna. Besides, macrochelids in the island tend to have characteristic patterns in some morphological features, e.g., 27 or 29 paris of dorsal setae, dinstinct pilose or plumose dorsal setae, and so on. Key words: Indonesia, Kaimana, Macrochelid mite, New Guinea Island, West Papua
MITOCHONDRIAL DNA VARIATIO OF THE RICE YELLOW STEM BORER, Scirpophaga incertulas, (LEPIDOPTERA: CRAMBIDAE) IN JAVA, INDONESIA sutrisno, hari
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.556

Abstract

Scirpophaga incertulas is one of economically important rice pests in South East Asia, including Indonesia. Systematic investigation on biological characteristics of ecological races based on recently changed of agricultural practiced and environment has been conducted  in order to asses knowledge on genetic variation of population of S. incertulas in Indonesia. A 685 bp segment of mitochondrialDNA COII was amplified from 42 different yellow stem borer samples from five locations in Java. The objectives of this study were to generate mitochondrial CO II  sequences for all available yellow stem borer  samples and to define haplotypes and nucleotide sequence diversity of the different yellow stem borer populations. Six different haplotypes (YSB1, YSB2, YSB3, YSB4, YSB5 and YSB6) were identified in yellow stem borer populations. The majority of the sampled individuals caried haplotype YSB2. Overall, the results of Tajima’s test statistic indicated that the population of Java was D= 0.85201, which suggests that there was no indicative of purifying selection or there was no presence of deleterious mutation segregating in the population. However, the results were not significant (P> 0:10) and additional studies are required to confirm this finding.Key words: Scirpophaga incertulas, yellow stem borer, MitochondrialDNA COII 
Macrochelid mites (Acari: Gamasida) from Kaimana of West Papua, Indonesia, and endemism of macrochelid mite fauna in New Guinea Island Sri Hartini; Gen Takaku
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.616

Abstract

As a result of our investigation in Lengguru area, Kaimana, West Papua, Indonesia, 6 species belonging to 2 genera of macrochelid mites(Acari: Gamasida: Macrochelidae) were collected from body surface of dung beetles (Scarabaeidae). Of these, one is undescribed species Macrocheles kaimanaensis sp. nov., and Macrocheles hallidayiWalter & Krantz, 1986is new record from Papua and West Papua (Indonesian parts of New Guinea Island).Male and deutonymph of Holostaspella rosichoni Hartini & Takaku, 2006 originally described from Papua were recorded for the first time. The remaining three species were M. amaliae Hartini, 2008, M. dispar (Berlese, 1910) and M. waigeoensis Hartini, 2008, which were previously collected from Raja Ampat, West Papua, and they are new to location in West Papua.       In total, 18 macrochelid species of 3 genera, including the results of the present study, have been recorded from New Guinea Island. Of these 10 species are endemic to New Guinea Island, and some are also distributed in Australia. So, macrochelid mite fauna of the island is clearly different from Indonesian fauna. Besides, macrochelids in the island tend to have characteristic patterns in some morphological features, e.g., 27 or 29 paris of dorsal setae, dinstinct pilose or plumose dorsal setae, and so on. Key words: Indonesia, Kaimana, Macrochelid mite, New Guinea Island, West Papua
TWO NEW RECORDS OF MACTRID BIVALVES (BIVALVIA: MACTRIDAE) FROM INDONESIA Reni Ambarwati
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.554

Abstract

The occurrence of two mactrid bivalves, Mactra (Mactra) queenslandica E.A. Smith and Heterocardia gibbosula Stoliczka, in coastal water of Sidoarjo, East Java, Indonesia is reported here. They are described and illustrated based on the local specimens collected. Previously, the distribution of M. queenslandica was reported only from northern-north-east Australia. This finding revealed that the distribution of this bivalve reaches Indonesia waters. Meanwhile, H. gibbosula is common in south-east Asian waters, however this is the first record for Indonesian waters. This result indicated that more mactrid bivalves could be discovered in Indonesian waters.
MITOCHONDRIAL DNA VARIATIO OF THE RICE YELLOW STEM BORER, Scirpophaga incertulas, (LEPIDOPTERA: CRAMBIDAE) IN JAVA, INDONESIA hari sutrisno
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.556

Abstract

Scirpophaga incertulas is one of economically important rice pests in South East Asia, including Indonesia. Systematic investigation on biological characteristics of ecological races based on recently changed of agricultural practiced and environment has been conducted  in order to asses knowledge on genetic variation of population of S. incertulas in Indonesia. A 685 bp segment of mitochondrialDNA COII was amplified from 42 different yellow stem borer samples from five locations in Java. The objectives of this study were to generate mitochondrial CO II  sequences for all available yellow stem borer  samples and to define haplotypes and nucleotide sequence diversity of the different yellow stem borer populations. Six different haplotypes (YSB1, YSB2, YSB3, YSB4, YSB5 and YSB6) were identified in yellow stem borer populations. The majority of the sampled individuals caried haplotype YSB2. Overall, the results of Tajima’s test statistic indicated that the population of Java was D= 0.85201, which suggests that there was no indicative of purifying selection or there was no presence of deleterious mutation segregating in the population. However, the results were not significant (P> 0:10) and additional studies are required to confirm this finding.Key words: Scirpophaga incertulas, yellow stem borer, MitochondrialDNA COII 
Macrochelid mite (Acari: Gamasida) associated with dung beetles in Baluran National Pak, East Java, Indonesia Sri Hartini; Dhian Dwibadra; Masahiro Ohara; Gen Takaku
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.565

Abstract

Eight mite species of the family Macrochelidae (Acari: Gamasida) were collected from the body surface of dung beetles in Baluran National Park, East Java, Indonesia. Of these, one species, Macrocheles subwallacei sp. nov., was describe as new to science. Female of Macrocheles crispa (Berlese, 1910) was rediscribed and the male was described for the first time. The remaining six species were Neopodocinum  jaspersi (Oudemans, 1900), M. dispar (Berlese, 1910), M. hallidayi Walter & Krantz, 1986, M. entetiensis Hartini & Takaku, 2005, M. jabarensis Hartini & Takaku, 2003 and M. persimilis Hartini, Dwibadra & Takaku, 2007.Key words: Acari, Macrochelidae, dung beetles, Baluran, East Java, Indonesia
EXPLORING THE DYNAMICS DURING COMMUNITY ASSEMBLY THROUGH COMMUNITY PHYLOGENETICS Rena Tri Hernawati; Daisy Wowor; Nicolas Hubert
TREUBIA Vol 42 (2015): Vol. 42, December 2015
Publisher : Research Center for Biology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/treubia.v42i0.663

Abstract

Species diversify through speciation and accumulate in ecological community, a process known as community assembly. Relying on both evolutionary mechanisms acting at regional scale and ecological mechanisms acting at local scale, the process of community assembly results from intricate interactions among mechanisms at play across varying spatial and temporal scales. During the last decade, community assembly theory has been reconsidered in the light of evolutionary dynamics of species diversification and ecological dynamics have been formalized in an explicit spatial framework (i.e. metacommunity theory). The aims of the present review are: (1) to present the community assembly theory and the main paradigms that have been proposed, (2) to discuss how the metacommunity theory as defined an explicit spatial framework for community ecology, (3)to discuss the potential mechanisms at play during community assembly and their associated predictions, (4) to present new approaches to study community assembly based on phylogenetics approaches and discuss how they have been integrated in empirical studies.

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