Ensuring accurate, non-destructive maturity classification of avocados is critical to supply chain optimization in agro-industrial systems. This study presents a predictive framework that integrates near-infrared (NIR) spectroscopy with ensemble stacking machine learning (ML) to enhance the precision of avocado ripeness assessment. The proposed methodology compares global versus variety-specific models for 'Hass' and 'Fuerte' avocado types, leveraging spectral data (900–1,700 nm) and multiple base classifiers, including random forest (RF), gradient boosting (GB), support vector machines (SVMs), decision trees (DT), k-nearest neighbors (KNN), and categorical boosting (CatBoost), combined via linear regression as a meta-learner. Experimental results revealed that the stacking models outperformed individual learners, with variety-specific GB model achieving the highest performance (Matthews correlation coefficient (MCC) =0.679, area under the curve (AUC) =0.931). These findings highlight the critical importance of varietal specificity in model calibration and demonstrate how ensemble strategies can improve robustness, scalability, and interpretability in intelligent agricultural systems. The proposed model provides a computationally efficient solution for real-time quality control and supports the deployment of AI-powered systems within agricultural supply chains in developing regions.