TRIMANTO TRIMANTO
Purwodadi Botanic Garden, Research Center for Plant Conservation and Botanic Gardens, Indonesian Institute of Sciences. Jl. Raya Surabaya-Malang Km 65, Purwodadi, Pasuruan 67163, East Java, Indonesia

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Species diversity and phylogenetic analysis of Heliconia spp. collections of Purwodadi Botanic Garden (East Java, Indonesia) inferred by rbcL gene sequences LIA HAPSARI; TRIMANTO TRIMANTO; DIDIK WAHYUDI
Biodiversitas Journal of Biological Diversity Vol. 20 No. 5 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200505

Abstract

Abstract. Hapsari L, Trimanto, Wahyudi D. 2019. Species diversity and phylogenetic analysis of Heliconia spp. collections of Purwodadi Botanic Garden (East Java, Indonesia) inferred by rbcL gene sequences. Biodiversitas 20: 1266-1283. Heliconia L. is a single genus in the family Heliconiaceae, with approximate consists of 200 species. It has wide morphological variations among and within species which led to problems in species identification. Species diversity and phylogenetic analysis using morphology and rbcL marker subjected to 17 Heliconia spp. living collections of Purwodadi Botanic Garden (PBG) have been conducted. The rbcL gene located in chloroplast genome is one of appropriate proposed marker for plant barcoding assessment. This study aimed to study morphology and genetic variability of the PBG Heliconiaceae collections, to confirms the species name for a more accurate identity record and to reveal the diversity and phylogenetics of the species. Morphological characterization showed high variability among Heliconia species, which included 3 subgenera (Heliconia, Stenochlamys, and Griggsia) and 1 hybrid. Each species possessed unique morphological characteristics. The common morphological characters which distinguished among and within Heliconia species includes leaf form, inflorescence type, and bract characteristics. Key to the Heliconia species examined is presented in this paper. However, molecular confirmation using rbcL sequences showed high conservation level (0.932) and low genetic variability. About 656 nucleotides were monomorphic and 33 positions were polymorphic which comprised 18 singleton variable sites and 15 parsimony informative sites. Twelve haplotypes were produced with haplotype diversity value 0.8952. Pairwise distance analysis shows that they were shared high similarity of rbcL sequences with very low genetic distance (0.022 to 0.000). The topology of phylogenetic tree resulted by Neighbour-Joining algorithm has the best grouping and be able to explain the relationship among species of Heliconia, although supported by low bootstrap (65). It was separated into two clades following its subgen. classification. Clade 1 consists of subgen. Heliconia and Griggsia; while clade 2 consists of subgen. Heliconia and Stenochlamys; also hybrid species. Further, separation of deeper branchings (section) was inconsistent and unclear. Upon this study, rbcL marker was considered too conserved thus less valuable for phylogenetic analysis at lower taxa among and within Heliconia spp. However, rbcL was suggested to distinguish at higher level taxa between closely related genus and above.
Spontaneous plant recolonization on reclaimed post-coal mining sites in East Kalimantan, Indonesia: Native versus alien and succession progress LIA HAPSARI; Trimanto Trimanto; Sugeng Budiharta
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210527

Abstract

Abstract. Hapsari L, Trimanto, Budiharta S. 2020. Spontaneous plant recolonization on reclaimed post-coal mining sites in East Kalimantan, Indonesia: Native versus alien and succession progress. Biodiversitas 21: 2003-2017. Comparative vegetation analyses subjected to recolonization of spontaneous plants were carried out in two post-coal mining reclamation sites, with different ages of reclamation, specifically 9 years old and 17 years old, in Bontang, East Kalimantan. This study aims to determine the spontaneous plant diversity and composition, identify the spontaneous alien plant species invasion (IAS), analyze the underlying micro-climates and soil factors and their association to the spontaneous plant recolonization, also to evaluate the succession progress. Results showed that both reclamation sites have undergone some vegetation and environmental improvements. The plant succession stage of both sites was identified at the same stage, as establishment phase of early-succession stage in transition to mid-succession stage. The spontaneous plants were comprised of two layers, i.e. (i) understories include grasses, ferns, lianas, herbs, shrubs and tree seedlings; and (ii) saplings include some of trees and small trees. Plant diversity indices on both sites were in moderate category. At understory layer, the 9-y.o. site was mostly dominated by grass Polytrias indica, whereas the 17-y.o. site was dominated by shrub Asystasia gangetica. At sapling layer, the 9-y.o. site was mostly dominated by Glochidion obscurum, whereas the 17-y.o. site was dominated by Macaranga tanarius. Dominant pioneer tree and shrub species in two reclamation sites mostly from general species component of secondary tropical forests from the families Euphorbiaceae, Phyllantaceae, Melastomaceae, Leguminosae, and Lamiaceae. It was recorded seven IAS in the 9-y.o. site, which six out of seven species were dominant. Meanwhile, in the 17-y.o. site was recorded eight IAS but only four species were dominant. Two dominant noxious weed species were also identified. Each IAS and noxious weed species has invasiveness traits that make them well-grown, successfully recolonized and invaded the reclamation site. Environmental factors include air temperature, air moisture, and light intensity; and soil conditions include pH, C/N ratio and physicochemical properties affected the variation of spontaneous plant establishment on each reclamation site. These comparative study findings may become inputs for coal mining operations management to evaluate and improve their reclamation program; such as by soil reconditions, controlling the populations of IAS, and planting more intensively of native tree species.