MUHAMAD SYUKUR
Departement of Agronomy and Horticulture, Faculty of Agriculture, Institut Pertanian Bogor. Jl. Meranti, Kampus IPB Darmaga, Bogor 16680, West Java, Indonesia

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Epistatic gene control on the yield of tomato at medium elevation in the tropical agroecosystem FAJAR PRAKOSO MAWASID; MUHAMAD SYUKUR; TRIKOESOEMANINGTYAS TRIKOESOEMANINGTYAS
Biodiversitas Journal of Biological Diversity Vol. 20 No. 7 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200713

Abstract

Abstract. Mawasid FP, Syukur M, Trikoesoemaningtyas. 2019. Epistatic gene control on the yield of tomato at medium elevation in the tropical agroecosystem. Biodiversitas 20: 1880-1886. Cultivation of tomatoes on the middle-low plain generally decreases the quantity and quality of the yield due to high-temperature stress. Increasing the size and weight of lowland tomatoes is needed to enhance national production. Information on the action and genetic model of target characters is needed in the preparation of the assembly program, especially for selection needs. This study aims to obtain genetic information and heritability of tomato yield characters, as a basis for assembling large tomato varieties for the lowlands. The study was conducted using six populations (P1, P2, F1, BCP1, BCP2, and F2) resulting from two different crosses of 99D x Tora (C-I) and 97D x Tora (C-II). The results show that the action of non-additive genes and non-allelic interactions has a large value, with duplicate epistasis being more dominant than complementary epistasis. Duplicate epistasis was found in the character of harvest time, fruit length, fruit diameter, fruit weight in cross I and flowering time, harvest time, fruit length, fruit diameter, and number of fruits in cross II, while complementary epistasis was found in flowering time, fruit weight per plant, number of fruits in cross I, and fruit weight, fruit weight per plant in cross II. Moderate to high heritability was found in the character of fruit length, fruit diameter, fruit weight, and fruit weight per plant. The values are higher in population from the cross I (99D x Tora) for each character, indicating that the cross I has a higher potential for genetic progress than cross II. Selection is recommended when the homozygosity has increased, using the Bulk method or Single Seed Decent. The two methods above can maintain variability in the next generation, so epistasis genes that control target characters are not drastically eliminated.
Resilience response to yellow leaf curl disease and identification of resistance gene analogs (RGA) in pepper (Capsicum annuum) Dyan Kusumaning Ayu; Awang Maharijaya; Muhamad Syukur; Sri Hendrastuti Hidayat
Biodiversitas Journal of Biological Diversity Vol. 22 No. 11 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d221104

Abstract

Abstract. Ayu DK, Maharijaya A, Syukur M, Hidayat SH. 2021. Resilience response to yellow leaf curl disease and identification of resistance gene analogs (RGA) in pepper (Capsicum annuum). Biodiversitas 22: 4731-4739. Pepper yellow leaf curl disease (PYLCD) caused by infection of Begomovirus is a serious threat to pepper production worldwide. Identification of the resistance gene analogs (RGA) and resilience response of pepper against PYLCD is needed especially for selection resistance genotype. Evaluation of resistance response involving 28 pepper genotypes was carried out through transmission of Begomovirus using whitefly (Bemisia tabaci) as vector. The result showed that IPB C12 and F4-012328-6-3 were potential resistance genotypes. A total of 15 R gene analogs (CaRGA) containing NBS motif, namely CARGA1 to CARGA15, were identified by degenerated PCR amplification and database mining. The alignment of deduced amino acid sequence revealed conservation of subdomains Ploop (GKTT), kinase2 (LVVLDDV), RNBSB/kinase3 (IILTTR) and GLPL. BLASTp analysis indicated that 15 RGA showed high homology at deduced amino acid level with R gene identified such as whitefly resistance protein Mi-1.2, Pvr 9 gene for potyvirus, Begomovirus resistance protein, TRGA15 and RGA 13 for putative late blight resistance. Phylogenetic analysis exhibited that isolated sequences distinguished into CNL-NBS groups. These pepper RGA could be considered as candidate sequences of resistance genes.