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All Journal Biodiversitas Journal of Biological Diversity
Supriyono Loekito
PT. Great Giant Pineapple. Jl. Raya Bandar Lampung-Menggala km. 77, Terbanggi Besar, Lampung Tengah 34165, Lampung, Indonesia
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

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Population genetics analysis of Phytophthora nicotianae associated with heart rot in pineapple revealed geneflow between population Auliana Afandi; Siti Subandiyah; Arif Wibowo; Ayaka Hieno; Afandi AFANDI; Supriyono Loekito; Haruhisa Suga; Koji Kageyama
Biodiversitas Journal of Biological Diversity Vol. 22 No. 8 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220830

Abstract

Abstract. Afandi A, Subandiyah S, Wibowo A, Hieno A, Afandi, Loekito S, Suga H, Kageyama K. 2021. Population genetics analysis of Phytophthora nicotianae associated with heart rot in pineapple revealed gene flow between populations. Biodiversitas 22: 3342-3348.  Phytophthora nicotianae has caused heart rot in pineapple. This study identified the population genetic diversity of P. nicotianae, collecting 90 isolates of P. nicotianae from the pineapple plantation sites in three provinces of Indonesia and, as comparisons, seven isolates from non-pineapple sites. Six polymorphic microsatellite markers amplified the non-coding region was used to characterize the population diversity. The phylogenetic tree constructed by MEGA revealed three major clades; the first and second clades were dominated by the isolates from pineapple plantation sites, and the third clade contained isolates from the non-pineapple sites. The allelic pattern analysis using Genalex software revealed the local alleles specific to Lampung and Blitar populations. The AMOVA of microsatellite genotypes data showed that the isolates had a low diversity among the population (6%) but high diversity within individual. Conclusively, P. nicotianae population associated with heart rot in pineapple showed geneflow between populations.
Co-Authors Afandi AFANDI Arif Wibowo Auliana Afandi Ayaka Hieno Haruhisa Suga Koji Kageyama Siti Subandiyah