SAHRUL ALIM
Program of Aquaculture, Faculty of Agriculture, Universitas Mataram. Jl. Majapahit No. 62, Mataram 83115, West Nusa Tenggara, Indonesia

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Diversity and abundance of plankton community in Tawang and Prigi Bays, natural settlement habitats of Spiny Lobster larvae in East Java, Indonesia ENDANG DEWI MASITHAH; MUHAMMAD GIANO FADHILAH; MUHAMAD AMIN; KURNIATI UMRAH NUR; LAILA MUSDALIFAH; SHIFANIA HANIFA SAMARA; YUDI CAHYOKO; ALIMUDDIN ALIMUDDIN; SAHRUL ALIM; BAGUS DWI HARI SETYONO
Biodiversitas Journal of Biological Diversity Vol. 24 No. 3 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240337

Abstract

Abstract. Masithah ED, Fadhilah MG, Amin M, Nur KU, Musdalifah L, Samara SH, Cahyoko Y, Alimuddin, Alim S, Setyono BDH. 2023. Diversity and abundance of plankton community in Prigi and Tawang Bays, natural settlement habitats of Spiny Lobster larvae in East Java, Indonesia. Biodiversitas 24: 1642-1649. Prigi and Tawang Bays have been well-known as settlement areas for spiny lobster larvae, Panulirus spp., in East Java, Indonesia. These locations may suggest suitable environments including diet availability for lobster larvae. Therefore, the present study aimed to investigate the type and abundance of plankton in both locations to discover potential live diets for lobster larvae. This study also explored plankton’s diversity, uniformity, and dominance indices in both locations. Plankton samples in each location were collected using a plankton net at four depths: 0.3 m, 2.5 m, 5 m, and 20 m with three replicates. The results revealed that 17 plankton species were identified from 0.30 m depth, 13 at 2.5 m, 11 at 5 m, and 13 at 20 m depth at Prigi Bay. In addition, 17 plankton species were discovered at 0.3 m depth, 11 at 2.5 m, 12 at 5 m, and 12 at 20 m at Tawang Bay. Among the most abundant species were Acartia sp., Calanus sp., Paracyclopina sp., and Oithona sp. The diversity indices observed in Karanggongso of Prigi Bay and Tawang Bay ranged from 2.02-2.49 and 2.17-2.65, respectively, within the moderate range. Similarly, the uniformity indices observed at both locations were moderate, ranging from 0.38-0.45 at Prigi Bay and 0.41-0.46 at Tawang Bay. There were no dominant species at both locations, as the dominance index values ranged from 0.13-0.30. Among the identified plankton species, Oithona sp., Calanus sp., Paracyclopina sp., and Acartia sp. are considered potential live feed for lobster larvae, and thus should be further studied.
Profiling of microbiome biodiversity and structure associated with the gastrointestinal tract of Pacific white shrimp (Penaeus vannamei) using high-throughput sequencing MUHAMAD AMIN; LAILA MUSDALIFAH; MUHAMMAD WAHYUDIN LEWARU; ALIMUDDIN ALIMUDDIN; SAHRUL ALIM; MELISSA BEATA MARTIN
Biodiversitas Journal of Biological Diversity Vol. 25 No. 5 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250515

Abstract

Abstract. Amin M, Musdalifah L, Lewaru MW, Alimuddin, Alim S, Martin MB. 2024. Profiling of microbiome biodiversity and structure associated with the gastrointestinal tract of Pacific white shrimp (Penaeus vannamei) using high-throughput sequencing. Biodiversitas 25: 1984-1992. The Pacific white shrimp (Penaeus vannamei) holds significant importance as an aquaculture commodity in Indonesia, where the government actively promotes the expansion of brackish water pond intensification and extensification. Despite its global cultured prominence, there remains a research gap regarding the biodiversity of the microbiome within the gastrointestinal tracts (GITs) of cultured P. vannamei and the implications of aquaculture practices on microbiota dynamics. This study focuses on investigating the diversity and structure of the GIT microbiome in P. vannamei from selective intensive aquaculture ponds in East Java, Indonesia. Sampling from three distinct intensive rearing ponds, shrimp GITs were meticulously dissected to analyze the bacterial composition using high-throughput sequencing. The microbial diversity within the gastrointestinal tracts of these shrimps from commercial intensive aquaculture farms was evaluated through 16S rRNA amplicon sequencing, targeting the V3-V4 region, and the utilization of Operational Taxonomic Units (OTUs) for bacterial categorization. The results revealed that the gastrointestinal tract of shrimp reared in an intensive aquaculture system was dominated by nine bacterial phyla, namely Proteobacteria (53.95%), followed by Actinobacteria (26.78%), Bacteroidetes (3.95%), Firmicutes (2.41%), Tenericutes (1.98%), Chloroflexi (1.22%), Verrucomicrobia (1.03%), Cyanobacteria (0.71%) and Planctomycetes (0.65%). High levels of microbial diversity were indicated by the diversity indices, reflecting both richness (Simpson's index) and evenness (Shannon index). The findings contribute to a deeper understanding of microbiota dynamics in aquaculture systems and underline the significance of preserving microbial diversity for sustainable shrimp production.