ALAN SOFFAN
Department of Plant Protection, Faculty of Agriculture, Universitas Gadjah Mada. Jl. Flora Bulaksumur, Sleman 55281, Yogyakarta, Indonesia

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Diversity of universal stress protein in Enterobacteriales and its reduced expressions on Pectobacterium brasiliense after manuka honey treatment CHOTIMAH CHOTIMAH; ALAN SOFFAN; TRI JOKO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 1 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250106

Abstract

Abstract. Chotimah, Soffan A, Joko T. 2024. Diversity of universal stress protein in Enterobacteriales and its reduced expressions on Pectobacterium brasiliense after manuka honey treatment. Biodiversitas 25: 49-52. Universal stress proteins (Usps) support the survival of an organism by increasing their expressions under stress conditions, which include nutritional deficiencies, heat shock, and antibiotics. However, the expression of uspA in Staphylococcus aureus decreased after manuka honey exposure. Manuka honey also inhibits the growth of Pectobacterium brasiliense, although its effect on the usp gene of this soft-rot pathogen has never been studied. This study aimed to determine the diversity of Usps in P. brasiliense and their orthologs from Enterobacteriales using phylogenetic analysis. The effects of manuka honey on usp gene expressions were also investigated using quantitative real-time polymerase chain reaction and pathogenicity assay of P. brasiliense on Chinese cabbage. The results revealed that the UspA, UspB, and UspE of P. brasiliense had the closest similarity to those of P. carotovorum. By contrast, UspG had the closest similarity to P. polaris. The usp gene expressions were downregulated by 5, 16, 10, and 62% in 5% (w/v) manuka honey treatment. When tested on Chinese cabbage, P. brasiliense treated with manuka honey caused smaller lesion symptoms than those in the control treatment. This reduced virulence of P. brasiliense may be related to the reduced expression of usp genes triggered by manuka honey.
Diversity of bacterial endosymbionts of Bemisia tabaci from some regions in Indonesia and the genetic diversity of Wolbachia endosymbiont NADIYAH HIDAYATI; ALAN SOFFAN; TRIWIDODO ARWIYANTO; ARMAN WIJONARKO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 11 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251130

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Abstract. Hidayati N, Soffan A, Arwiyanto T, Wijonarko A. 2024. Diversity of bacterial endosymbionts of Bemisia tabaci from some regions in Indonesia and the genetic diversity of Wolbachia endosymbiont. Biodiversitas 25: 4304-4314. Bemisia tabaci Gennadius 1889 (Hemiptera) is an insect that associates with endosymbiont bacteria to meet nutritional needs lacking in its food. The species has both primary and secondary endosymbionts, with infections showing significant dynamism among populations. Wolbachia is a facultative endosymbiont that infects 66% of all insect species, including B. tabaci, which is a key focus of this study. The study aimed to investigate the diversity of bacterial endosymbiont infections in several B. tabaci populations collected from Java and Sumatra, Indonesia, to explore the genetic diversity of Wolbachia endosymbiont. The B. tabaci population was collected from 17 districts in Java and Sumatra, and to determine the presence of bacterial endosymbiont was determined through molecular analysis using specific primers. The study involved a comprehensive methodology, including the construction and comparison of multiple alignment sequences, phylogenetic analysis, and genetic differentiation of Wolbachia in 10 representative populations of B. tabaci, which were then compared with Wolbachia sequences from other countries and arthropods. The results showed the presence of various bacterial endosymbionts found among the B. tabaci populations, including Candidatus portiera, Arsenophonus sp., Cardinium sp., Hamiltonella sp., Wolbachia sp., and Rickettsia sp. Wolbachia was found in all B. tabaci samples, while other endosymbiont bacteria varied quite widely among all B. tabaci population samples. The genetic diversity of Wolbachia of B. tabaci from Indonesia showed close relatedness and has a different clade from Wolbachia from other countries and arthropods. The population structure of Wolbachia populations from Java was genetically related and similar to that of Wolbachia from Sumatra.