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Journal : Indonesian Journal of Applied Statistics

Implementation of Transfer Learning for Covid-19 and Pneumonia Disease Detection Through Chest X-Rays Based on Web Nindya Eka Apsari; Sugiyanto Sugiyanto; Sri Sulistijowati Handajani
Indonesian Journal of Applied Statistics Vol 5, No 1 (2022)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v5i1.59442

Abstract

Coronavirus disease 2019, known as COVID-19, attacks the human respiratory system caused by severe acute respiratory syndrome coronavirus-2 (SARS-Cov-2). COVID-19 disease and pneumonia show similar symptoms such as fever, cough, even headache. Diagnosis of pneumonia can be tested through diagnostic tests, including blood tests, chest X-rays, and pulse oximetry, while the diagnosis of COVID-19 recommended by WHO is with swab test (RT-PCR). But in fact, the swab test method takes a relatively long time, for about one to seven days, for the result, and is not cheap. For that, there needs to be a development that can be one of the options in diagnosing COVID-19 and pneumonia at once, especially since both diseases have similar symptoms. One option that can be done is the diagnosis using a chest X-ray. This research aims to detect COVID-19 disease and pneumonia through chest X-rays using transfer learning to increase the accuracy of disease diagnosis with a more efficient time. The architecture used is EfficientNet B0 with variations in optimization parameters, learning rates, and epochs. EfficientNet B0 Adam optimization with a learning rate of 0.001 in the 6th epochs is a great model that we obtained. Furthermore, the evaluation of the model got accuracy, precision, recall, and f1-score of 92%. Then the model visualization is done using Grad-CAM. To implement the best model, web application development is done to make it easier to detect COVID-19 disease and pneumonia.Keywords: COVID-19; pneumonia; EfficientNet; transfer learning; web
Penerapan Generalized Cross Validation dalam Model Regresi Smoothing Spline pada Produksi Ubi Jalar di Jawa Tengah Trionika Dian Wahyuningsih; Sri Sulistijowati Handajani; Diari Indriati
Indonesian Journal of Applied Statistics Vol 1, No 2 (2018)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v1i2.26250

Abstract

Sweet Potato is a useful plant as a source carbohydrates, proteins, and is used as an animal feed and ingredient industry. Based on data from the Badan Pusat Statistik (BPS), the production fluctuations of the sweet potato in Central Java from year to year are caused by many factor. The production of sweet potato and the factors that affected it if they are described into a pattern of relationships then they do not have a specific pattern and do not follow a particular distribution, such as harvest area, the allocation of subsidized urea fertilizer, and the allocation of subsidized organic fertilizer. Therefore, the production model of sweet potato could be applied into nonparametric regression model. The approach used for nonparametric regression in this study is smoothing spline regression. The method used in regression smoothing spline is generalized cross validation (GCV). The value of the smoothing parameter (λ) is chosen from the minimum GCV value. The results of the study show that the optimum λ value for the factors of harvest area, urea fertilizer and organic fertilizer are 5.57905e-14, 2.51426e-06, and 3.227217e-13 that they result a minimum GCV i.e 2.29272e-21, 1.38391e-16, and 3.46813e-24. Keywords: Sweet potato; nonparametric; smoothing spline; generalized cross validation.
Bootstrap Residual Ensemble Methods for Estimation of Standard Error of Parameter Logistic Regression To Hypercolesterolemia Patient Data In Health Laboratory Yogyakarta Fransiska Grace S.W.; Sri Sulistijowati Handajani; Titin Sri Martini
Indonesian Journal of Applied Statistics Vol 1, No 1 (2018)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v1i1.24086

Abstract

Logistic regression is one of regression analysis to determine the relationship between response variable that have two possible values and some predictor variables. The method used to estimate logistic regression parameters is the maximum likelihood estimation (MLE) method. This method will produce a good estimate of the parameters if the estimation results have a small standard error.In a research, the characteristics of good data must be representative of the population. If the samples taken in small size they will cause a large standard error value. Bootstrap is a resampling method that can be used to obtain a good estimate based on small data samples. Small data will be resampling so it can represent the population to obtain minimum standard error. Previous studies have discussed resampling bootstrap on residuals as much as b times. In this research we will be analyzed resampling bootstrap on the error added to the dependent variable and take the average parameter estimation ensemble logistic regression model resampling result. Next we calculate the standard value error logistic regression parameters bootstrap results.This method is applied to the hypercholesterolemic patient status data in Health Laboratory Yogyakarta and after bootstrapping, the standard error produced is smaller than before the bootstrap resampling.Keywords : logistic regression, standard error, bootstrap resampling, parameter estimation ensemble
Uji Asumsi Proportional Hazard pada Faktor yang Mempengaruhi Waktu Tahan Hidup Pasien Kanker Paru Elnatan Dimas Aditya; Sri Sulistijowati Handajani; Ririn Setiyowati
Indonesian Journal of Applied Statistics Vol 1, No 2 (2018)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v1i2.26496

Abstract

Lung cancer is the disease that its death risk always increase, because of that the survival time of its patient is interesting to be researched. One of the method that can be used to research survival time of lung cancer patient is Cox regression. It has an assumption that called proportional hazard assumption. Proportional hazard assumption can be tested by graph method that is log-log graph, but the result is only used as temporary suspicion. For a better result, the goodness of fit test can be used by calculate the correlation between rank of survival time and schoenfeld residual. The result is age variabel doesn’t satisfy proportional hazard assumption. Keywords : cox regression; proportional hazard assumption; log-log graph; goodness of fit test.
Model Penyebaran Penyakit SIR Tipe Rantai Binomial dengan Kontak Random dan Waktu Penyembuhan Bernilai Tak Hingga Ilham Asyifa Maulana Rosyid; Respatiwulan Respatiwulan; Sri Sulistijowati Handajani
Indonesian Journal of Applied Statistics Vol 3, No 2 (2020)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v3i2.44307

Abstract

Susceptible-Infected-Recovered (SIR) epidemic model is an epidemic model that illustrates the pattern of disease spread with the characteristics of individuals who have recovered cannot be re-infected and have a permanent immune system. The binomial chain type epidemic model assumes that infection spreads in discrete time units and the number of the infected individuals follows a binomial distribution. This research aims to discuss  binomial chain type SIR epidemic model by simulating the model. The transition probability depends on  the number of infected individuals in the period   the number of individuals encountered, and  the transmission probability. This model also assumes an infinite recovery time ( = ∞). This situation illustrates that infected individuals remain contagious during the period of spread of the disease. This situation can arise when the causative agent of the disease has a long life. Then simulations are performed by giving different transmission probability  The results show that the greater transmission probability will cause the probability of a new individual being infected in the next period to be greater.Keywords : SIR epidemic model, binomial chain, infinite recovery time
A Robust Regression by Using Huber Estimator and Tukey Bisquare Estimator for Predicting Availability of Corn in Karanganyar Regency, Indonesia Hasih Pratiwi; Yuliana Susanti; Sri Sulistijowati Handajani
Indonesian Journal of Applied Statistics Vol 1, No 1 (2018)
Publisher : Universitas Sebelas Maret

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/ijas.v1i1.24090

Abstract

Linear least-squares estimates can behave badly when the error distribution is not normal, particularly when the errors are heavy-tailed. One remedy is to remove influential observations from the least-squares fit. Another approach, robust regression, is to use a fitting criterion that is not as vulnerable as least squares to unusual data. The most common general method of robust regression is M-estimation. This class of estimators can be regarded as a generalization of maximum-likelihood estimation. In this paper we discuss robust regression model for corn production by using two popular estimators; i.e. Huber estimator and Tukey bisquare estimator.Keywords : robust regression, M-estimation, Huber estimator, Tukey bisquare estimator