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All Journal Indonesian Journal of Agricultural Science Biodiversitas Journal of Biological Diversity
Bahagiawati Amir Husin
ICABIOGRAD
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

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SSR MARKERS REVEALED GENETIC DIVERGENCE OF RICE BROWN PLANTHOPPER POPULATIONS MAINTAINED ON TWO SETS OF DIFFERENTIAL HOST VARIETIES Chaerani Chaerani; Siti Yuriyah; Ahmad Dadang; Kusumawaty Kusumanegara; Diani Damayanti; Bahagiawati Amir Husin; Sutrisno Sutrisno; Muhamad Yunus
Indonesian Journal of Agricultural Science Vol 22, No 2 (2021): DECEMBER 2021
Publisher : Indonesian Agency for Agricultural Research and Development

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21082/ijas.v22n2.2021.p77-84

Abstract

Resistance screening of promising rice lines in Indonesia requires the use of brown planthopper (BPH) biotypes 1, 2, and 3. Three BPH populations have been raised as biotypes 1, 2, and 3 on differential rice host of improved varieties Pelita I-1 (no Bph gene), IR26 (Bph1), and IR42 (bph2), respectively. Three alternative populations have also been developed on the respective traditional varieties TN1 (no Bph gene), Mudgo (Bph1), and ASD7 (bph2). Although these populations displayed two virulent patterns other than biotype 1 to 3 phenotypes, they were expected to be discriminated into two virulence groups by SSR analysis. The study aimed to investigate the level of genetic variation among the six BPH populations using SSR markers and to relate it with the observed virulence patterns. Genotyping of 30 females with 29 polymorphic SSR markers revealed higher genetic parameter values in populations reared on improved varieties than those on traditional varieties. This difference was marked as two population clusters in PCoA plots corresponding to the host variety type, in contrast to the previous assumption that clustering would be based on virulence patterns. The presence of individuals with unwanted virulence allele, either resulting from contamination during the long period of rearing or lack of host adaptation period, is suspected. The result of this study indicates that the six populations are not suitable for resistance screening. Virulence selection must be performed until they attain biotype 1 to 3 phenotypes which can be genetically separated by DNA markers.
SRAP analysis of brown planthopper (Nilaparvata lugens) populations maintained on differential rice host varieties Chaerani Chaerani; Ahmad Dadang; Fatimah Fatimah; Bahagiawati Amir Husin; Sutrisno Sutrisno; Muhamad Yunus
Biodiversitas Journal of Biological Diversity Vol. 22 No. 10 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d221018

Abstract

Abstract. Chaerani, Dadang A, Fatimah, Husin BA, Sutrisno, Yunus M. 2021. SRAP analysis of brown planthopper (Nilaparvata lugens) populations maintained on differential rice host varieties. Biodiversitas 22: 4266-4272. Brown planthopper (Nilaparvata lugens Stål) biotypes differ in virulence to rice varieties carrying different Bph resistance genes. These biotypes are reported can be genetically discriminated against using DNA markers. Four brown planthoppers (BPH) populations, which displayed two virulence phenotypes, have been produced by selection and adaptation on four differential host varieties. Sequence-related amplified polymorphism (SRAP) marker preferentially amplifies the coding regions in the genome and, thus, can discriminate the observed virulence variations among those populations. This study aimed to analyze the genetic variation of four developed BPH populations using SRAP markers. Genetic analysis of a total of 40 BPH females with 18 polymorphic primers revealed equal genetic diversity parameter values among populations (Na: 1.1 to 1.4, Ne: 1.2 to 1.3, I: 0.22 to 0.29, He: 0.14 to 0.18, and UHe: 0.15 to 0.19). Analysis of population structure by AMOVA indicated low genetic variation among populations (9%). Still, pairwise PhiPT population values between all pairs of the population revealed the presence of moderate genetic differentiations (PhiPT ranged from 0.57 to 0.133, P<0.01). Two partial clusters in plots of PCoA were corresponded to two virulence groups, indicating the ability of SRAP markers to discriminate virulence phenotype. Further selection and adaptation are expected can form four desired virulence patterns with complete genetic separation among the population before its application as resistance screening agents of rice lines.
Co-Authors Ahmad Dadang Ahmad Dadang Chaerani Chaerani Chaerani Chaerani Diani Damayanti Fatimah Fatimah Kusumawaty Kusumanegara Muhamad Yunus Muhamad Yunus Siti Yuriyah Sutrisno Sutrisno Sutrisno Sutrisno