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Ali Basim Yousif
Al Mustansiriyah University

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A survey of exact motif finding algorithms Ali Basim Yousif; Hussein Keitan Al-Khafaji; Thekra Abbas
Indonesian Journal of Electrical Engineering and Computer Science Vol 27, No 2: August 2022
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/ijeecs.v27.i2.pp1109-1118

Abstract

Deoxyribonucleic acid (DNA) motif finding (discovery/mining) in biological chains is the most recent challenging and interesting trend in bioinformatics. It represents a crucial phase in most bioinformatics systems related to unravelling the secrets of gene functions. Despite the efforts made to date to produce robust algorithms, DNA motif finding remains a difficult task for researchers in this field. In general, biological pattern locating algorithms are categorized into two categories: probabilistic and numerical methods. In this paper, we provide a survey of exact DNA motif finding algorithms and their working principles with a suitable comparison among these algorithms to provide an essential step for researchers in this field.
Co-Authors Hussein Keitan Al-Khafaji Thekra Abbas