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All Journal Bulletin of Electrical Engineering and Informatics Indonesian Journal of Electrical Engineering and Computer Science
Nor Azlina Ab Aziz
Multimedia University
Electrical & Electronics Engineering

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Comparison of microarray breast cancer classification using support vector machine and logistic regression with LASSO and boruta feature selection Nursabillilah Mohd Ali; Nor Azlina Ab Aziz; Rosli Besar
Indonesian Journal of Electrical Engineering and Computer Science Vol 20, No 2: November 2020
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/ijeecs.v20.i2.pp712-719

Abstract

Breast cancer is the most frequent cancer diagnosis amongst women worldwide. Despite the advancement of medical diagnostic and prognostic tools for early detection and treatment of breast cancer patients, research on development of better and more reliable tools is still actively conducted globally. The breast cancer classification is significantly important in ensuring reliable diagnostic system. Preliminary research on the usage of machine learning classifier and feature selection method for breast cancer classification is conducted here. Two feature selection methods namely Boruta and LASSO and SVM and LR classifier are studied. A breast cancer dataset from GEO web is adopted in this study. The findings show that LASSO with LR gives the best accuracy using this dataset.
A case study of microarray breast cancer classification using machine learning algorithms with grid search cross validation Nursabillilah Mohd Ali; Rosli Besar; Nor Azlina Ab Aziz
Bulletin of Electrical Engineering and Informatics Vol 12, No 2: April 2023
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/eei.v12i2.4838

Abstract

Breast cancer is one of the leading causes of death and most frequently diagnosed cancer amongst women. Annually, almost half a million women do not survive the disease and die from breast cancer. Machine learning is a subfield of artificial intelligence (AI) and computer science that uses data and algorithms to mimic how humans learn, and gradually improving its accuracy. In this work, simple machine learning methods are used to classify breast cancer microarray data to normal and relapse. The data is from the gene expression omnibus (GEO) website namely GSE45255 and GSE15852. These two datasets are integrated and combined to form a single dataset. The study involved three machine learning algorithms, random forest (RF), extra tree (ET), and support vector machine (SVM). Grid search cross validation (CV) is applied for hyperparameter tuning of the algorithms. The result shows that the tuned SVM is best among the tested algorithms with accuracy of 97.78%. In the future it is recommended to include feature selection method to get the optimal features and better classification accuracies.
Co-Authors Nursabillilah Mohd Ali Rosli Besar