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Kuttaiyapillai, Dhanasekaran
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Clinical named entity extraction for extracting information from medical data Kuttaiyapillai, Dhanasekaran; Madasamy, Anand; Ayyavu, Shobanadevi; Sayeed, Md Shohel
Indonesian Journal of Electrical Engineering and Computer Science Vol 35, No 3: September 2024
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/ijeecs.v35.i3.pp1722-1731

Abstract

Clinical named entity extraction (NER) based on deep learning gained much attention among researchers and data analysts. This paper proposes a NER approach to extract valuable Parkinson’s disease-related information. To develop an effective NER method and to handle problems in disease data analytics, a unique NER technique applies a “recognize-map-extract (RME)” mechanism and aims to deal with complex relationships present in the data. Due to the fast-growing medical data, there is a challenge in the development of suitable deep-learning methods for NER. Furthermore, the traditional machine learning approaches rely on the time-consuming process of creating corpora and cannot extract information for specific needs and locations in certain situations. This paper presents a clinical NER approach based on a convolutional neural network (CNN) for better use of specific features around medical entities and analyzes the performance of the proposed approach through fine-tuning NER with effective pre-training on the BC5CDR dataset. The proposed method uses annotation of entities for various medical concepts. The second stage develops a clinically NER method. This proposed method shows interesting results on the performance measures achieving a precision of 92.57%, recall of 92.22%, and F1- measure of 91.6%.
Co-Authors Ayyavu, Shobanadevi Madasamy, Anand Sayeed, Md Shohel