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Examining the Range of Genes in Soil Microbes and Their Ability to Make Biopolymers Using RNA identification and DNA Extraction: Meneliti Kisaran Gen pada Mikroba Tanah dan Kemampuannya Membuat Biopolimer Menggunakan Identifikasi RNA dan Ekstraksi DNA Altaee, Nadia; Aljozary, Mustafa Jasim; Hasan, Murtadha Kadhim
Indonesian Journal on Health Science and Medicine Vol. 1 No. 3 (2024): Desember
Publisher : Universitas Muhammadiyah Sidoarjo

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.21070/ijhsm.v2i1.64

Abstract

This research was conducted to investigate the genetic diversity and functional capabilities of microbes in agricultural soils in Iraq. The study involved soil sampling from various agricultural farms located in the regions of Oil production station in Baghdad encompassing a range of soil types including sandy loam, clay loam, and silty clay. The research explores the genetic diversity and functional capabilities of microbes in agricultural soils, focusing on macrophages' potential to produce biopolymers through practical experiments. Diversity of the soil microbial communities was high, with an average Shannon index of 6.1. Analysis of the RNA sequencing revealed Proteobacteria (28.7%), Actinobacteria (24.5%) and Bacteroidetes (13.2%) as the main phyla and Streptomyces (9.8%), Bradyrhizobium (6.7%) and Pseudomonas (4.6%) as the most abundant genera. The most abundant functional categories in the soil microbiome as determined through metagenomic analysis were carbohydrate metabolism, amino acid metabolism and protein metabolism. Potentials of the soil, mainly of the clay loam from Basra, for PHA production were tested in biopolymer production assays, where 1.2 mg/g was produced in the clay loam from Basra. We performed differential abundance analysis and identified 500 significantly different OTUs, with Streptomyces and Bradyrhizobium as most significantly enriched, and Nitrospira and Nitrosomonas as most significantly depleted. Finally, the soil microbiome in Iraq shows a rich diversity, a high functional potential and biotechnological relevance. The study findings reveal considerable diversity and functional potential within soil microbial communities, highlighting their roles in sustainable agriculture. Understanding the genetic resources provided by soil microbes could help harness their abilities to improve crop yields while minimizing environmental impacts. Highlights: High microbial diversity in Iraqi agricultural soils, Shannon index 6.1. Abundant Proteobacteria, Actinobacteria, functional potential in metabolism, biopolymer production. Soil microbes crucial for sustainable agriculture and improved crop yields. Keywords: Soil microbiome, Metagenomics, RNA sequencing, Biopolymers, Sustainable agriculture, Poly-hydroxy-alkenoates
DETECTION OF CRYPTOSPORIDIUM SPECIES IN CATTLE AND HANDLERS BY MOLECULAR TECHNIQUE IN WASIT PROVINCE Hasan, Murtadha Kadhim; Mohan, Zahraa Hamid; Saeed, Farah Mohammed; Mahdi, Oras Abdulsayed; Abdulhussein, Rasha Hamzah; hamzah, Sarah Hussein; Kareem, Mustafa basim
Journal of Medical Genetics and Clinical Biology Vol. 1 No. 3 (2024): Journal of Medical Genetics and Clinical Biology
Publisher : PT. Antis International Publisher

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.61796/jmgcb.v1i3.377

Abstract

I collected 300 cow feces samples (130 males - 170 females) and used molecular analysis to detect the parasite. The results showed significant differences (p ≤ 0.05) between the infection rate using particle technology of 38% (38/100) and 41% (41/100) in cows and breeders, respectively, while traditional microscopic methods showed 21% (21/100) and 17% (17/100) in cows and breeders, respectively. DNA sequence analyzes of 10 isolates from infected cows identified four species of the Cryptosporidium parasite genus which included: C. parvum (6/10), C. andersoni (2/10), C. bovis (1/10) and C. ryanae (1/10. The species C. andersoni, C. parvum, C. bovis and C. ryanae have been genetically confirmed through DNA sequence analysis, and it is considered the first recording of these species in local cattle in Iraq. In breeders, three types of the Cryptosporidium parasite were recorded through DNA sequence analysis in 10 isolates from infected individuals, which included: C. parvum (2/10), C. andersoni (5/10) and C. hominis (3/10). It is considered the first recording of this species among breeders in Iraq.