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Detection of Antibiotics Resistance Genes and Molecular Characterization of Salmonella spp from Clinical and Poultry Samples in Yenagoa Metropolis of Bayelsa Eboh D. D; Anyiam I. V
African Journal of Sciences and Traditional Medicine Vol 1 No 2 (2024): African Journal of Sciences and Traditional Medicine
Publisher : Darul Yasin Al Sys

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.58578/ajstm.v1i2.4275

Abstract

Salmonellae are facultative anaerobes, intracellular Gram-negative motile bacteria. They are one of the most important zoonotic pathogens transmitting among humans and animals and are responsible for high cases of morbidity and mortality in a wide range of hosts. Due to the similarity of antibiotic classes used to treat animals and humans, there is a high risk for the emergence of the multi-drug resistant (MDR) strains. Thus, this study was aimed at detection of antibiotics resistance genes and molecular characterization of Salmonella spp from clinical and livestock samples. Hundred (100) stool samples comprising of fifty (50) clinical and fifty (50) poultry were respectively collected from Federal Medical Centre (FMC) Yenagoa, Niger Delta University Teaching Hospital (NDUTH), Okolobiri, Diette Koki hospital, Opolo, and poultry farms at Swali, Kpansia and Azikoro. The samples were analyzed by culture using various enrichment, selective and differential media (selenite F broth, bismuth sulphite agar and MacConkey agar), biochemical tests, and molecular methods. Eleven (11) isolates were recovered from the samples comprising of two (2) clinical and nine (9) poultry, and resulting in a prevalence of 4% and 18% respectively. The result of the antibiotic profile showed that all isolates were multi drug resistant to ceftriaxone (63.6%), ofloxacin (0%), gentamicin (9.1%), co-trimoxazole (36.4%), levofloxacin (9.1%), clindamycin (90.9%), augmentin (72.7%), cefixime (100%), nitrofurantoin (100%), tazobactam/piperacillin (72.7%) and ciprofloxacin (18.2%). Following the biofilm test analysis, none of the recovered isolates is a biofilm former hence, there is no relationship between biofilm formation and the high level of resistance recorded. Screening for the presence of resistance genes revealed that 83.3% of the isolates have tet A. 66.7% have SHV gene while 16.7% have VEB and NDM genes respectively. This depicts a strong correlation between the observed high level of antimicrobial resistance amongst the isolates and prevalence of resistance genes. The phylogenetic analysis result showed that the evolutionary distances as computed were in agreement with the phylogenetic placement of the 16S rRNA of the isolates within the Salmonella, Shigella and Proteus spp and revealed a closely relatedness to the Salmonella enterica, Shigella flexneri, Proteus columbae and Proteus cibarius. The study established that only the fluoroquinolones and aminoglycosides can be relied upon in the effective treatment of infections with MDR Salmonella, Shigella and Proteus spp and restriction of indiscriminate use of antibiotics in food animals will be an effective measure to stop/prevent uncontrollable outbreaks of infections due to these isolates even as antibiogram results are constantly monitored worldwide.
Epidemiology of Antibiotic Multidrug Resistant genes in Gram Negative Bacteria among Symptomatic Patients with Bacteriuria Attending Federal Medical Center Yenagoa Bayelsa State Nigeria Oburu V. O; Anyiam I. V
African Journal of Clinical Medicine and Pharmacy Research Vol 2 No 1 (2025): African Journal of Clinical Medicine and Pharmacy Research
Publisher : Darul Yasin Al Sys

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.58578/ajcmpr.v2i1.4273

Abstract

The global rise in antibiotic resistance among Gram-negative bacteria poses a significant threat to public health, particularly in resource-limited settings. This study investigates the epidemiology of multidrug-resistant (MDR) genes in Gram-negative bacteria isolated from symptomatic patients with bacteriuria at the Federal Medical Center Yenagoa, Bayelsa State, Nigeria. A total of 100 urine specimens were collected from patients within the age range of 13 to 70 years attending Federal Medical Centre Yenagoa. The specimens were analyzed by culture, biochemical tests, and molecular methods. The Antibiotic susceptibility test was done using the Kirby-Bauer disc diffusion method following clinical and laboratory standard institute (CLSI) guidelines. The results showed that 26 bacterial isolates were obtained which include; Escherichia coli 14(53.8%), Klebsiella pneumoniae 6(23.1%), Proteus mirabilis 4 (15.4%), and Pseudomonas aeruginosa 2(7.7%). The highest occurring isolate was E. coli 14(53.8%) while the lowest was P. aeruginosa 2(7.7%). E. coli is the predominant isolate in females 9(34.6%). Female had the highest occurring isolates 14(53.5%) compared to male 12(46.1%). The age ranges with the highest isolates was 51-60 years and 61-70 years with 7(26.9%) respectively, while the lowest was within the age range of 13-20 years with 1(3.8%). The antibiotic susceptibility tests revealed that E. coli showed the highest resistance to ampicillin (85.7%), ceftriaxone (78.57%), piperacillin/tazobactam (64.28%), and cotrimoxazole (64.28%), with notable susceptibility to ciprofloxacin (57.14%) and levofloxacin. K. pneumoniae demonstrated strong resistance to ampicillin and piperacillin/tazobactam at 83.33% respectively, while being most susceptible to ciprofloxacin, gentamicin, and azithromycin at 66.7% respectively. P. mirabilis exhibited high resistance to ceftriaxone, tetracycline, and azithromycin (75%) respectively, but showed maximum susceptibility to piperacillin/tazobactam, ciprofloxacin, gentamicin, and levofloxacin (75%) respectively. P. aeruginosa was most resistant and completely susceptible to multiple antibiotics at 50% and 100%. The resistance genes CTX-M and SHV were present in P. mirabilis while TEM was absent. CTX-M, SHV and TEM were not present in E. coli, K. pneumoniae, and P. aeruginosa. The 16S rRNA of the isolates showed a percentage similarity to other species at 100%. The evolutionary distances computed using the Jukes-Cantor method were in agreement with the phylogenetic placement of the 16S rRNA of the isolates within the E. coli, Klebsiella, Pseudomonas, and Providencia sp., and revealed a close relatedness to the E. coli, K. pneumoniae, P. aeruginosa, and Providencia stuartii. In conclusion, the observed antibiogram profile revealed multidrug resistance among the isolated bacteria and at the same time pathogenic. Therefore, it is recommended to conduct comprehensive surveillance, investigate risk factors, utilize molecular techniques, evaluate antimicrobial stewardship, and promote one health approach to prevent bacteriuria.
Molecular Analysis and Detection of Antibiotic Resistance Genes in Aerobic Bacteria Isolated from Bacteremia Patients at Tertiary Healthcare Institutions George W. O; Anyiam I. V
African Journal of Clinical Medicine and Pharmacy Research Vol 2 No 1 (2025): African Journal of Clinical Medicine and Pharmacy Research
Publisher : Darul Yasin Al Sys

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.58578/ajcmpr.v2i1.4274

Abstract

Bacteremia is the presence of bacteria in the bloodstream. Aerobic bacteria, such as Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus, are common causes of bacteremia and have developed resistance to various antibiotics. The study aims to analyze and detect antibiotic resistance genes of aerobic bacteria isolated from bacteremia patients in tertiary healthcare institutions. A total of 110 blood specimens were collected from patients attending Federal Medical Centre Yenagoa and Gloryland INRI Medical Centre Yenagoa. The specimens were analyzed by culture, biochemical test, and molecular methods. Out of the 110 blood cultures, 4.5% were positive. Organisms isolated were Staphylococcus aureus (60%) and Klebsiella pneumoniae (40%). The isolates were more common in males (80%) than females (20%). The prevalence of bacteremia between children and adults was 5% and 4.4% respectively. Antibiotic susceptibility test the gram positive isolates showed maximum resistance to ampiclox (100%), zinnacef (100%), erythromycin (100%), and 66.7% resistance to amoxacillin and rocephin respectively. However, high susceptibility was shown to gentamicin (100%), levofloxacin (100%), and ciprofloxacin (66.7%). The gram negative isolates showed maximum resistance to ciprofloxacin (100%) and 50% resistance to cefotaxime, gentamicin, chloramphenicol, ceftriaxone, levofloxacin ampicillin/sulbactam and co-trimoxazole respectively. Nevertheless, maximum susceptibility was shown to ofloxacin, tetracycline, and azithromycin with 100% respectively. The molecular detection of antibiotics resistance genes revealed the presence of CTX-M (100%), and QnRA (33.3%) in the S. aureus strains. CTX-M (100%), QnRA (100%), and QnRB (50%) were seen in the K. pneumoniae strains. However, the aaC gene was found neither in the S. aureus strains nor K. pneumoniae strains. Phylogenetic analysis using 16s rRNA sequences identified bacterial isolates; S. aureus and K. pneumoniae. These results underscore the complexity of resistance patterns and the molecular mechanisms driving them in the studied pathogens. Crucial effort should be put in place to enhance surveillance and regularly update resistance profiles to guide treatment.