Dan Wood
Computer Engineering, Dartmouth College, NH, USA

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Calibration-Light Subject-Independent Motor Imagery BCI via Self-Supervised Pretraining and Conformer Qiyou Wu; Gaotian Mi; Dan Wood
Journal of Technology Informatics and Engineering Vol. 4 No. 1 (2025): APRIL | JTIE : Journal of Technology Informatics and Engineering
Publisher : University of Science and Computer Technology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.51903/jtie.v5i1.493

Abstract

Motor imagery (MI) electroencephalography (EEG) is a foundational paradigm for non-invasive brain–computer interfaces (BCIs). However, its practical adoption is constrained by time-consuming per-user calibration and limited cross-subject generalization. This study evaluates a calibration-light MI-BCI framework that combines self-supervised masked EEG pretraining with a lightweight Conformer fine-tuning model. Experiments were conducted on BCI Competition IV Dataset 2b using only the labeled sessions 01T–03T, with artifact-annotated trials removed according to the official 1023 markers. Three deployment-relevant settings were examined: within-subject evaluation (01T–02T → 03T), strict leave-one-subject-out (LOSO) evaluation, and few-shot adaptation with k = 1/5/10 trials per class from the held-out subject’s screening sessions. Full within-subject benchmarking included CSP+LDA, EEGNet, DeepConvNet, ShallowFBCSPNet, supervised Conformer, and SSL+Conformer, while the subject-independent and few-shot analyses focused on CSP+LDA, EEGNet, supervised Conformer, and SSL+Conformer. In the fully calibrated setting, the best mean accuracy was obtained by ShallowFBCSPNet (62.23% ± 14.16%), whereas SSL+Conformer achieved 54.85% ± 11.15% and slightly outperformed the supervised Conformer (53.56% ± 8.81%). Under strict LOSO, EEGNet achieved the highest mean accuracy (52.92% ± 8.25%), while SSL+Conformer reached 51.56% ± 7.18%. In few-shot adaptation, SSL+Conformer achieved the highest mean accuracy at k = 10 (52.84% ± 7.64%) among the core calibration-light methods. The proposed model had a size of 0.1329 MB, a median CPU latency of 0.8777 ms/trial, and LOSO calibration values of ECE = 0.0630 and Brier = 0.4995. These results indicate that masked EEG pretraining provides a competitive lightweight baseline and is most useful when a modest amount of target-subject calibration data is available.
A Lightweight Medical Foundation Model for Cross-Modal Multi-Task Pretraining and Parameter-Efficient Few-Shot Transfer on MedMNIST Gaotian Mi; Tong Ye; Dan Wood
Journal of Technology Informatics and Engineering Vol. 4 No. 3 (2025): DECEMBER | JTIE : Journal of Technology Informatics and Engineering
Publisher : University of Science and Computer Technology

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.51903/jtie.v4i3.492

Abstract

Medical imaging has rapidly adopted pre-trained backbones, yet many transfer-learning pipelines remain expensive to train and difficult to adapt when data, compute, or privacy constraints limit full fine-tuning. We present STMedFM, a lightweight medical multi-task backbone baseline designed for fast prototyping across 2D images and 3D volumes. STMedFM uses modality-specific convolutional stems (2D and 3D) and a shared low-depth encoder, and it supports parameter-efficient transfer via Low-Rank Adaptation (LoRA) and bottleneck adapters. We pretrain STMedFM with supervised multi-task learning on four MedMNIST tasks (PathMNIST, BloodMNIST, DermaMNIST, and OrganMNIST3D) using official train/validation/test splits. We then compare (i) training from scratch, (ii) full fine-tuning from the multi-task checkpoint, and (iii) parameter-efficient fine-tuning (LoRA or adapters) that updates only a small fraction of parameters. Under a fixed compute budget (200 pretraining steps; 120 fine-tuning steps for 2D tasks; 50 steps for the 3D task), multi-task pretraining improved performance on PathMNIST (test accuracy 0.568 → 0.634; macro AUROC 0.886 → 0.914) and preserved most gains under PEFT (LoRA AUROC 0.909; Adapter AUROC 0.913) while training only 4,041–5,225 parameters versus 160,105 for full fine-tuning. For DermaMNIST, pretraining increased macro AUROC from 0.746 (Scratch, weighted) to 0.756 (Pretrain+Full), with similar AUROC under LoRA (0.760) and Adapter (0.763). In contrast, BloodMNIST and OrganMNIST3D showed mixed behavior, including cases where Scratch outperformed pretrained variants, indicating that transfer in this compact shared encoder is task-dependent and budget-sensitive. Calibration results were similarly non-monotonic: methods with better AUROC did not always achieve lower ECE. Overall, our results show that a small cross-modal multi-task model can serve as a practical MedMNIST-scale transfer baseline and that LoRA/adapters offer substantial parameter savings when task alignment is favorable. STMedFM should therefore be viewed as a lightweight supervised multi-task backbone on benchmark-scale tasks rather than a broadly general medical foundation model.