This paper introduces an optimal control problem in a two-strain SIR epidemic model with viral mutation and vaccine administration. The purpose of this study was to investigate the efficacy and cost-effectiveness of two disease prevention strategies, namely restriction of community mobility to prevent disease transmission and vaccine intervention. We consider the time-dependent control case, and we use Pontryagin’s Maximum Principle to derive necessary conditions for the optimal control of the disease. We also calculate the Average Cost-Effectiveness Ratio (ACER) and the Incremental Cost-Effectiveness Ratio (ICER) to investigate the cost-effectiveness of all possible strategies of the control measures. The results of this study indicate that the most cost-effective disease control strategy is a combination of mobility restriction and vaccination.
                        
                        
                        
                        
                            
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