Journal of the Medical Sciences (Berkala Ilmu Kedokteran)
Vol 54, No 1 (2022)

Development of a SYBR Green real-time PCR-based assay system for detection of Neisseria gonorrhoeae

Andi Yasmon (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)
Rela Febriani (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)
Louisa Ivana Utami (Master Program in Biomedical Science, Faculty of Medicine Universitas Indonesia, Jakarta)
Fithriyah Fithriyah (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)
Yeva Rosana (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)
Fera Ibrahim (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)
Pratiwi Sudarmono (Department of Microbiology, Faculty of Medicine Universitas Indonesia/Cipto Mangunkusumo Hospital)



Article Info

Publish Date
20 Apr 2022

Abstract

Diagnosis of Neisseria gonorrhoeae infection is needed for patient therapy and for reducing this bacterial transmission in the population. The culture method is a gold standard method for N. gonorrhoeae detection, however it has low sensitivity. Among molecular methods with high sensitivity and specificity, SYBR Green real-time PCR is the potential method for N. gonorrhoeae detection. In this study, we developed an SYBR Green real-time PCR-based system assay for N. gonorrhoeae detection. Several PCR conditions were optimized and analyzed including primer annealing temperature, DNA template volume, the limit of detection (LoD), cross-reaction with others (bacteria, viruses, fungus, protozoa), and quality assurance. The results showed that the annealing temperature and DNA template volume were 60oC and 5 µL, respectively. The LoD was 29 DNA copies corresponding to 3 bacterial cells per reaction. No cross-reaction was detected for other bacteria, viruses, fungus and protozoa. The external quality assurances enrolled in 2019 and 2021 showed 100% concordance. The preliminary testing for clinical samples was also 100% concordance. In conclusion, the SYBR Green real-time PCR-based system assay developed in this study is promising for application in clinical laboratories.

Copyrights © 2022






Journal Info

Abbrev

bik

Publisher

Subject

Immunology & microbiology Neuroscience

Description

Journal of the Medical Sciences (JMedSci) or Berkala Ilmu Kedokteran (BIK) is an international, open-access, and double-blind peer-reviewed journal, published by Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada Yogyakarta Indonesia. JMedSci aiming to communicate high-quality ...