Nusantara Science and Technology Proceedings
Multi-Conference Proceeding Series D

Development of Microsatellite Markers to Determine Genetic Diversity of Indonesian Betel Nut (Areca catechu L.)

Muhammad Roiyan Romadhon (Study Program of Plant Breeding and Biotechnology, Graduate School of IPB University, Kampus IPB Dramaga, Bogor 16680, Indonesia)
Sobir (Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Kampus IPB Dramaga, Bogor 16680, Indonesia)
Willy Bayuardi Suwarno (Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Kampus IPB Dramaga, Bogor 16680, Indonesia)
Deden Derajat Matra (Department of Agronomy and Horticulture, Faculty of Agriculture, IPB University, Kampus IPB Dramaga, Bogor 16680, Indonesia)



Article Info

Publish Date
05 Jan 2023

Abstract

Areca nut (Areca catechu) belongs to the monocotyledonous and palm family of plants known as betel nut or supari plants. The Center of origin areca nut comes from India. Areca nut is a cross-pollinated plant with a heterozygous heterogeneous genetic constitution. Next-generation sequencing is widely used for plant breeding activities, including developing SSR markers with an in-silico approach. This research aims to develop an SSR marker to detect genetic diversity in local areca nut from Indonesia. The genomic data used to develop SSR markers were obtained from the Whole Genome Sequencing of Pinang Reyan Hainan Cultivars obtained from NCBI. Fragments containing SSR regions were isolated using MISA software, and primers were designed with Primer3web v.4.1.0 (https://bioinfo.ut.ee/primer3/). The average total size of the sequences tested was 168770731.8, with a total number of SSRs identified as many as 1149,813. SSR motifs are used as a step in genetic diversity research because these motifs will be used in primary attachments which in turn can affect genetic diversity. There were twenty-eight primers generated from four amplicons (100-150, 150-200, 200-250, and 250-300 bp) used for multiplex primers with motifs (AAT)37, (TA)53, (TA)54, (TC)52, (TC)52, (TG)53, and (AG)54.

Copyrights © 2023






Journal Info

Abbrev

nuscientech

Publisher

Subject

Agriculture, Biological Sciences & Forestry Chemical Engineering, Chemistry & Bioengineering Economics, Econometrics & Finance Engineering Law, Crime, Criminology & Criminal Justice Materials Science & Nanotechnology Medicine & Pharmacology

Description

NST Proceeding supports regional research communities to globalise their findings in Science and Technology by providing an open access, online platform in line with international publishing standards and indexing scholarly conference proceedings. The current emphasis of the NST Proceeding includes ...