AGRIVITA, Journal of Agricultural Science
Vol 38, No 2 (2016): JUNE

UTILIZATION OF cpDNA SEQUENCES TO IDENTIFY 15 MANGO ACCESSIONS

Sukartini Sukartini (Indonesian Tropical Fruits Research Institute Jl. Raya Solok – Aripan Km. 8 Solok, West Sumatra, Indonesia, 27301)
Taryono Taryono (Faculty of Agriculture University of Gadjah Mada Jl. Flora Bulaksumur, Yogyakarta, Indonesia, 55281)
Panjisakti Basunanda (Faculty of Agriculture University of Gadjah Mada Jl. Flora Bulaksumur, Yogyakarta, Indonesia, 55281)
Rudi Hari Murti (Faculty of Agriculture University of Gadjah Mada Jl. Flora Bulaksumur, Yogyakarta, Indonesia, 55281)



Article Info

Publish Date
27 Apr 2016

Abstract

Information about genetic relationship and genetic diversity are an inevitable need in mango breeding program. Base substitution value, genetic distance and grouping of 15 mango accessions based on accessions in chloroplast DNA (cpDNA) among 15 mango accessions were assessed. The samples were originated from Mango Germplasm, Cukur Gondang Research Station of Indonesian Tropical Fruits Research Institute, Pasuruan, East Java. Sequencing of Chloroplast DNA was used to obtain nucleotide sequence data. Paired specific primer rpl20 F - rps12 R and atp F - rbcL R were used for amplification of non-coding area of mango DNA chloroplast and sequencing processes as well. All data were analyzed using Software MEGA 6. The result showed that total numbers and nucleotide base sequences varied among all accessions. All accessions were grouped in five different clusters that might be used as source of parental breeding.

Copyrights © 2016






Journal Info

Abbrev

AGRIVITA

Publisher

Subject

Agriculture, Biological Sciences & Forestry

Description

AGRIVITA Journal of Agricultural Science is a peer-reviewed, scientific journal published by Faculty of Agriculture Universitas Brawijaya Indonesia in collaboration with Indonesian Agronomy Association (PERAGI). The aims of the journal are to publish and disseminate high quality, original research ...