Innovative: Journal Of Social Science Research
Vol. 5 No. 4 (2025): Innovative: Journal Of Social Science Research

Desain Primer PCR Secara In Silico untuk Deteksi Gen NS1 DENV-2 Strain New Guinea C (NGC) sebagai Diagnosis Dini Demam Berdarah Dengue

Putri, Ni Kadek Sri Adnyani Alit (Unknown)
Yowani, Sagung Chandra (Unknown)



Article Info

Publish Date
23 Jul 2025

Abstract

Dengue Hemorrhagic Fever (DHF) is a serious infectious disease caused by the Dengue virus, with a high morbidity and mortality rate, especially in tropical countries such as Indonesia. One sensitive and specific method for early diagnosis is Polymerase Chain Reaction (PCR), with the Non-Structural gene 1 (NS1) as the ideal molecular target. This study aims to design an in silico PCR primer that is specific to the NS1 gene of Dengue virus serotype 2 (DENV-2) strain New Guinea C (NGC). The design was done using the Primer3Plus software, and the specificity validation was done through Primer-BLAST against the NCBI database. The selected primary pair has a length of 20 bases with a melting temperature (Tm) of 60.0°C, and a GC content of 50.0% and 45.0%, respectively. The primer was able to amplify the NS1 gene segment along 258 bp specifically without exhibiting cross-amplification of the human genome or other DENV serotypes. These results suggest that the designed primer has strong potential to be further developed as a molecular diagnostic tool for early detection of DENV-2 infection.

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Journal Info

Abbrev

Innovative

Publisher

Subject

Humanities Computer Science & IT Law, Crime, Criminology & Criminal Justice Public Health Other

Description

Innovative: Journal Of Social Science Research is a journal managed by Universitas Pahlawan Tuanku Tambusai which bridges researchers to publish research results in all scientific fields (multidiscipline). This includes the fields of education, health, law, economics, IT (Informatics Engineering), ...