Natural Sciences Engineering and Technology Journal
Vol. 5 No. 2 (2025): Natural Sciences Engineering and Technology Journal

Targeted Metabolic Engineering of Saccharomyces cerevisiae for High-Efficiency Valorization of Lignocellulosic Biomass into Superior-Quality Bioplastics

Nur Diana (Department of Molecular Biology, CMHC Research Center, Palembang, Indonesia)
Zaki Ahmad (Department of Physics Education, Enigma Institute, Palembang, Indonesia)
Selma Fajic (Division of Natural Resources Economy, Banja Luka College, Banja Luka, Bosnia and Herzegovina)



Article Info

Publish Date
28 Aug 2025

Abstract

The global transition towards a sustainable circular bioeconomy urgently requires innovative platforms for converting renewable waste streams into value-added products. Lignocellulosic biomass, particularly agricultural residue like rice straw, stands as a vast, underutilized carbon source. This study details the systematic metabolic engineering of Saccharomyces cerevisiae for the high-efficiency production of poly(3-hydroxybutyrate) (PHB), a biodegradable bioplastic, from rice straw hydrolysate. A multi-faceted synthetic biology approach was implemented in S. cerevisiae CEN.PK2-1C. A robust xylose co-utilization pathway was integrated using codon-optimized genes from Scheffersomyces stipitis. The PHB biosynthesis pathway from Cupriavidus necator was introduced using a cassette of strong, constitutive yeast promoters (pTDH3, pTEF1, pPGK1). To maximize carbon flux towards PHB, key competing pathways were eliminated via CRISPR-Cas9-mediated gene knockouts of the primary alcohol dehydrogenase (ADH1) and glycerol-3-phosphate dehydrogenase (GPD1) genes. The performance of the final engineered strain was evaluated in high-cell-density fed-batch fermentation using detoxified rice straw hydrolysate sourced from Palembang, Indonesia. The final engineered strain, YL-PHB-05 (Δadh1 Δgpd1), demonstrated superior performance. In fed-batch bioreactor cultivation, it achieved a final cell dry weight of 33.8 ± 1.5 g/L and a PHB titer of 15.2 ± 0.7 g/L, with an intracellular PHB accumulation of 45.0 ± 1.2% of cell dry weight. This corresponds to a high yield of 0.28 g PHB per gram of consumed sugars. Crucially, the produced PHB exhibited a superior weight-average molecular weight (Mw) of 1.2 x 10⁶ Da with a polydispersity index of 2.1. In conclusion, this work successfully demonstrates a robust strategy for engineering S. cerevisiae into an efficient cell factory for producing high-quality bioplastics from a globally relevant agricultural waste stream. The high titers, yields, and superior polymer properties achieved present a significant advancement towards establishing an economically viable and sustainable process for bioplastic production within a circular bioeconomy.

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