Proceeding Mulawarman International Conference on Tropical Public Health
Vol. 2 No. 2 (2025): The 4th MICTOPH

Identification of microRNA-Based Targeted Therapy as Novel StrategyAgainst Colorectal Carcinoma: In Silico Analysis

Adnan, Nohan Noer (Unknown)
Pratiwi, Sari Eka (Unknown)
Ulfah, Ridha (Unknown)



Article Info

Publish Date
25 Nov 2025

Abstract

Background : Dysregulation of microRNAs plays a key role in the development of multiple cancers, including colorectal carcinoma (CRC), the second leading cause of cancer-related mortality worldwide. The high mortality rate is partly driven by the limited effectiveness of conventional therapies. Objective : This study aimed to explore the pathogenesis of CRC and identify candidate microRNAbased targeted therapeutic agents through an in silico approach. Research Methods/ Implementation Methods : MicroRNA expression profiles were retrieved from dbDEMC 3.0. Differentially expressed microRNAs (DEMs) were identified using GEO2R and OrangeApp with a cutoff P-value ≤ 0.05 and Log2FC < −1.5. Predicted target genes of DEMs were intersected with CRC-related genes obtained from GEPIA2. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses were then conducted on the intersecting genes. Results : One DEM was identified as a potential therapeutic candidate for colon cancer (hsa-miR- 139-5p) and one for rectal cancer (hsa-miR-193b-3p). A total of 780 DEGs associated with hsa-miR- 139-5p and 4,744 DEGs associated with hsa-miR-193b-3p were found. Intersection with colon cancer (33,287 DEGs) and rectal cancer (29,599 DEGs) yielded 25 overlapping DEGs for hsa-miR- 139-5p and 10 for hsa-miR-193b-3p. GO and KEGG analyses showed involvement in key biological processes and cancer-related signaling pathways. Three target DEGs of hsa-miR-139-5p (FOXO1A, ZEB1, HOXA9) were linked to transcriptional misregulation in cancer, while one DEG targeted by hsa-miR-193b-3p (14-3-3 gene) was associated with the cell-cycle pathway. Conclusion/Lesson Learned : This in silico analysis identifies hsa-miR-139-5p and hsa-miR-193b-3p as promising microRNA-based therapeutic candidates for CRC, highlighting critical genes and pathways involved in CRC carcinogenesis.

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Journal Info

Abbrev

mictoph

Publisher

Subject

Public Health

Description

The Mulawarman International Conference on Tropical Public Health (MICTOPH) is an annual international conference organized by the Faculty of Public Health (FKM), Universitas Mulawarman. This event serves as a platform to gather and integrate diverse, constructive, and comprehensive ideas, concepts, ...