Journal of Multidisciplinary Sustainability Asean
Vol. 2 No. 3 (2025)

A Bioinformatics Analysis Of Circulating Microrna Signatures As Novel Biomarkers For Predicting Chemotherapy Response

Muttaqin, T. Amirul (Unknown)
Allen, Esther (Unknown)
Salazar, Beatriz (Unknown)



Article Info

Publish Date
20 Jun 2025

Abstract

Background. Chemotherapy response is highly variable, leading to ineffective treatment and toxicity. Reliable, non-invasive biomarkers to predict response a priori are urgently needed. Circulating microRNAs (miRNAs) are stable liquid biopsy candidates, but previous studies often lack robust validation. Purpose. This study aimed to identify and validate a novel, non-invasive circulating miRNA signature to accurately predict chemotherapy response using a large-scale bioinformatic approach. Method. A comprehensive in silico study was conducted. We aggregated and harmonized 948 patient samples from five public datasets (GEO, TCGA). A machine learning pipeline (LASSO + Random Forest) was applied to a Training Set (n=664) to discover a predictive signature. The signature was then validated in an Internal Testing Set (n=284) and a separate External Validation Cohort (n=120). Results. We aggregated and harmonized 948 patient samples from five public datasets (GEO, TCGA). A machine learning pipeline (LASSO + Random Forest) was applied to a Training Set (n=664) to discover a predictive signature. The signature was then validated in an Internal Testing Set (n=284) and a separate External Validation Cohort (n=120). We identified and validated a 7-miRNA circulating signature (c-miRSig). The model demonstrated high accuracy in both the internal (AUC 0.89) and external (AUC 0.86) validation sets. Conclusion. The signature was also a powerful prognostic tool, significantly stratifying patients for progression-free survival (p < 0.001). Functional analysis linked the signature to key chemoresistance pathways (PI3K-Akt, ABC transporters). The c-miRSig is a robust, non-invasive biomarker with dual predictive and prognostic power. This computationally validated signature provides a strong foundation for a clinically viable test to personalize chemotherapy, sparing non-responders from toxic, ineffective treatment.

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Journal Info

Abbrev

multidisciplinary

Publisher

Subject

Computer Science & IT Education Languange, Linguistic, Communication & Media Library & Information Science Other

Description

Journal of Multidisciplinary Sustainability Asean is an international peer-reviewed journal dedicated to facilitating the exchange of results of high-quality research in all aspects of all areas of knowledge. The scope of the Journal of Multidisciplinary Sustainability Asean is not only in the form ...