Jurnal Mandala Pharmacon Indonesia
Vol. 11 No. 2 (2025): Jurnal Mandala Pharmacon Indonesia 

QSAR Classification and Molecular Docking for Identifying BCL-2 Inhibitor Candidates

Harfita, Nur Laily (Unknown)
Harizahayu, Harizahayu (Unknown)



Article Info

Publish Date
31 Dec 2025

Abstract

B-cell lymphoma 2 (BCL-2) is an anti-apoptotic protein implicated in the progression and chemoresistance of multiple cancers. This study integrates QSAR-based machine learning (ML) classification and molecular docking to identify potential BCL-2 inhibitors. The Gradient Boosting classifier trained on PubChem fingerprints (881 bits) achieved the best predictive performance (accuracy: 83.52%, ROC-AUC: 0.8829). External virtual screening further identified high-probability active compounds, including Beclomethasone Dipropionate (0.9880) and Ulipristal Acetate (0.9866), highlighting their potential for drug repurposing. Docking analysis showed that Ulipristal Acetate exhibited the strongest binding affinity (–8.187 kcal/mol), forming a hydrogen bond with GLY A:145 and engaging key residues within the BH3-binding pocket of BCL-2. These findings demonstrate the effectiveness of QSAR-ML–assisted virtual screening in prioritizing repurposable candidates for BCL-2 inhibition.

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Journal Info

Abbrev

jmpi

Publisher

Subject

Medicine & Pharmacology

Description

Jurnal Mandala Pharmacon Indonesia merupakan jurnal (Open Journal System) untuk informasi bidang ilmu farmasi yang memuat kajian tentang ilmu pengetahuan dan teknologi dalam bentuk tulisan ilmiah, studi kepustakaan dan studi empirik. Jurnal Mandala Pharmacon Indonesia telah memiliki ISSN cetak : ...