JSFK (Jurnal Sains Farmasi & Klinis)
Vol 13 No 1 (2026): J Sains Farm Klin 13(1), April 2026

Computational Screening of Functional Monomers for Esculetin Recognition Using a Semiempirical Tight-Binding Approach

Dia Indah Azhari (Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Universitas Andalas, Padang, Indonesia)
Akmal Djamaan (Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Universitas Andalas, Padang, Indonesia)
Aiyi Asnawi (Department of Pharmacochemistry, Faculty of Pharmacy, Universitas Bhakti Kencana, Bandung, Indonesia)
Purnawan Pontana Putra (Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Universitas Andalas, Padang, Indonesia)



Article Info

Publish Date
30 Jun 2026

Abstract

Esculetin is a bioactive coumarin derivative with reported antioxidant, anti-inflammatory, and anticancer activities. Despite its pharmacological relevance, achieving selective molecular recognition of esculetin in complex systems remains challenging. Computational screening of functional monomers offers a rational strategy to identify candidates capable of forming stable noncovalent interactions with the target molecule. In this study, 21 monomers were evaluated using a semiempirical extended tight-binding (xTB) approach. Initial screening was performed through automated interaction site screening (aISS) to estimate interaction energies. The aISS results identified 4-vinylbenzeneboronic acid as having the most favorable interaction energy (-312.87 kcal/mol), followed by 2-Acrylamido-2-methyl-1-propanesulfonic acid (-25.34 kcal/mol), p-vinylbenzoic acid (-24.71 kcal/mol), trans-3-(3-pyridyl)acrylic acid (-23.04 kcal/mol), and 9-vinylcarbazole (-22.17 kcal/mol). To evaluate dynamic stability, selected complexes were subjected to molecular dynamics simulations. The results showed that 2-Acrylamido-2-methyl-1-propanesulfonic acid exhibited the lowest average energy (-76.301 kcal/mol), followed by p-vinylbenzoic acid (-70.03 kcal/mol) and 4-vinylbenzeneboronic acid (-69.70 kcal/mol). Metadynamics simulations further confirmed this trend, with total energy (Etot) values of -76.23 kcal/mol, -69.96 kcal/mol, and -69.64 kcal/mol for the same monomers, respectively. The consistency between molecular dynamics and metadynamics analyses indicates that 2-Acrylamido-2-methyl-1-propanesulfonic acid forms the most energetically stable complex with esculetin under simulated conditions. This study provides a computational basis for selecting functional monomers for esculetin recognition systems and supports further experimental validation.

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Journal Info

Abbrev

jsfk

Publisher

Subject

Biochemistry, Genetics & Molecular Biology Health Professions Immunology & microbiology Medicine & Pharmacology Public Health

Description

Jurnal Sains Farmasi & Klinis (J Sains Farm Klin) adalah jurnal ilmiah di bidang kefarmasian yang diterbitkan oleh Fakultas Farmasi Universitas Andalas bekerjasama dengan lembaga profesi "Ikatan Apoteker Indonesia" (IAI) daerah Sumatera Barat sejak tahun ...