Biodiversitas Journal of Biological Diversity
Vol. 11 No. 3 (2010)

Predicting infectivity of Arbuscular Mycorrhizal fungi from soil variables using Generalized Additive Models and Generalized Linear Models

IRNANDA AIKO FIFI DJUUNA (Department of Soil Sciences, Faculty of Agriculture and Agriculture Technology, The State University of Papua (UNIPA), Manokwari School of Earth and Geographical Science, The University of Western Australia)
LYNETTE K. ABBOTT2 (School of Earth and Geographical Science, The University of Western Australia)
KIMBERLY VAN NIEL (School of Earth and Geographical Science, The University of Western Australia)



Article Info

Publish Date
05 Jun 2010

Abstract

Djuuna IAF, Abbott LK, Van Niel K (2010) Predicting infectivity of Arbuscular Mycorrhizal fungi from soil variables using Generalized Additive Models and Generalized Linear Models. Biodiversitas 11: 145-150. The objective of this study was to predict the infectivity of arbuscular mycorrhizal fungi (AM fungi), from field soil based on soil properties and land use history using generalized additive models (GAMs) and generalized linear models (GLMs). A total of 291 soil samples from a farm in Western Australia near Wickepin were collected and used in this study. Nine soil properties, including elevation, pH, EC, total C, total N, P, K, microbial biomass carbon, and soil texture, and land use history of the farm were used as independent variables, while the percentage of root length colonized (%RLC)was used as the dependent variable. GAMs parameterized for the percent of root length colonized suggested skewed quadratic responses to soil pH and microbial biomass carbon; cubic responses to elevation and soil K; and linear responses to soil P, EC and total C. The strength of the relationship between percent root length colonized by AM fungi and environmental variables showed that only elevation, total C and microbial biomass carbon had strong relationships. In general, GAMs and GLMs models confirmed the strong relationship between infectivity of AM fungi (assessed in a glasshouse bioassay for soil collected in summer prior to the first rain of the season) and soil properties.Key words: AM Fungi, GAM, GLM, land use.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...