Biodiversitas Journal of Biological Diversity
Vol. 9 No. 2 (2008)

Cucumber (Cucumis sativus L.) relationship analysis using RAPD-PCR and isozyme methods

NUR INDAH JULISANIAH (Jurusan Biologi FMIPA Universitas Mataram (UNRAM), Mataram 83125.)
LILIEK SULISTYOWATI (Fakultas Pertanian Universitas Brawijaya (UNIBRAW), Malang 65145.)
ARIFIN NOOR SUGIHARTO (Fakultas Pertanian Universitas Brawijaya (UNIBRAW), Malang 65145.)



Article Info

Publish Date
24 Mar 2008

Abstract

RAPD-PCR method and isozyme analysis were used to obtain information of genetic relationship among cucumber varieties. Such information is urgently utilized to support plant breeding program of cucumber. Research was done at the Biotechnology Laboratory of Plant Pest and Diseases, Faculty of Agriculture of Brawijaya University, Malang and Molecular Biology Laboratory, Faculty of Matemathic and Natural Sciences of Brawijaya University, Malang. DNA isolation was done using CTAB method by additional NaCl modification. Sixteen primers from operon were employed to amplify DNA genome by RAPD-PCR. Two enzymes, Esterase and AAT were chosen for isozyme analysis. Clad 97 Program was used for analyzing the data and results in data grouping based on proximity value. Cluster analysis based on isozyme data indicated that there was an adequate lower genetic variation in cucumber, where seven of nine tested varieties showed proximity value of 1.00. Eleven of sixteen primers in RAPD-PCR analysis produced DNA bands. Relativity analysis by using RAPD-PCR method showed high enough of genetic variation. Relativity analysis by using both methods showed that variety 07 was the furthermost. The proximity value between varieties 01 and 02 was 0.916667, these varieties have the higest proximity value among allvarieties.© 2008 Jurusan Biologi FMIPA UNS SurakartaKey words: Cucumis sativus L., RAPD-PCR, isozyme.

Copyrights © 2008






Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...