Biodiversitas Journal of Biological Diversity
Vol. 18 No. 2 (2017)

Genotype of Brahman and Brahman Cross Cattle based on SNP in Insulin-Like Growth Factor Binding Protein-3 (IGFBP-3) gene sequences

DWI AHMAD PRIYADI (Department of Animal Breeding and Reproduction, Faculty of Animal Science, Universitas Gadjah Mada. Jl. Fauna No. 3, Bulaksumur, Depok, Sleman 55281, Yogyakarta)
PANJONO PANJONO (Departemen of Animal Production, Faculty of Animal Science, Universitas Gadjah Mada. Jl. Fauna No. 3, Bulaksumur, Depok, Sleman 55281, Yogyakarta)
SIGIT BINTARA (Department of Animal Breeding and Reproduction, Faculty of Animal Science, Universitas Gadjah Mada. Jl. Fauna No. 3, Bulaksumur, Depok, Sleman 55281, Yogyakarta)
TETY HARTATIK (Department of Animal Breeding and Reproduction, Faculty of Animal Science, Universitas Gadjah Mada. Jl. Fauna No. 3, Bulaksumur, Depok, Sleman 55281, Yogyakarta)



Article Info

Publish Date
15 Apr 2017

Abstract

Priyadi DA, Panjono, Bintara S, Hartatik T. 2017. The genotype of Brahman and Brahman Cross Cattle based on SNP in Insulin-Like Growth Factor Binding Protein-3 (IGFBP-3) gene sequences. Biodiversitas 18: 795-800. The IGFBP-3 gene is a potential marker of cattle growth, which is related to the functions that influence the growth, energy metabolism, reproduction and immunity. The genome was isolated from whole blood samples of 10 Brahman cattle and 16 Brahman Cross cattle. Cattle IGFBP-3 gene that targeted in this study was located in the part of intron 2, exon 3 and part of intron 3. The gene targets were amplified using specific primers by Polymerase Chain Reaction (PCR) technique, resulting 563 bp amplification product. As data comparison to reveal the SNP, the GenBank sequences (n = 14) from various breed and countries were used. The objective of this study was to reveal the SNP on the Brahman and Brahman Cross IGFBP-3 gene. The results obtained 3 genotypes from one SNP that spread in the sample population. The SNP was located in intron 2 at position 3,930 (GA). The Polymorphism could be recognized by PvuII restriction enzymes. There was not enough evidence to associate the SNP with the phenotype (at pre-weaning age) of Brahman and Brahman Cross cattle. There was a genetic diversity in the population studied. Knowledgeable SNP could be used as genetic markers for further research on Brahman and Brahman Cross cattle.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...