Biodiversitas Journal of Biological Diversity
Vol. 18 No. 4 (2017)

Diversity of antibiotic-producing Actinomycetes in mangrove forest of Torosiaje, Gorontalo, Indonesia

YULIANA RETNOWATI (Graduate Study Program of Biology, Faculty of Biology, Universitas Gadjah Mada. Jl. Teknika Selatan, Sleman 55281, Yogyakarta, Indonesia - Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Negeri Gorontalo. Jl. Jenderal )
LANGKAH SEMBIRING (Faculty of Biology, Universitas Gadjah Mada. Jl. Teknika Selatan, Sleman 55281, Yogyakarta, Indonesia.)
SUKARTI MOELJOPAWIRO (Faculty of Biology, Universitas Gadjah Mada. Jl. Teknika Selatan, Sleman 55281, Yogyakarta, Indonesia.)
TJUT SUGANDAWATY DJOHAN (Faculty of Biology, Universitas Gadjah Mada. Jl. Teknika Selatan, Sleman 55281, Yogyakarta, Indonesia.)
ENDANG SUTARININGSIH SOETARTO (Faculty of Biology, Universitas Gadjah Mada. Jl. Teknika Selatan, Sleman 55281, Yogyakarta, Indonesia.)



Article Info

Publish Date
29 Jul 2017

Abstract

Retnowati Y, Sembiring L, Moeljopawiro S, Djohan TS, Soetarto ES. 2017. Diversity of antibiotic-producing actinomycetes in mangrove forest of Torosiaje, Gorontalo, Indonesia. Biodiversitas 18: 1453-1461. Actinomycetes for antibiotic production have been studied at various extreme environments. Mangrove forest of Torosiaje in Gorontalo Province, Indonesia has unique geomorphological conditions where the forest is surrounded by karst ecosystem consisting of fringe and overwash types. Therefore, the objective of this study was to analyze the distribution and diversity of antibiotic-producing Actinomycetes in various rhizosphere including different locations and mangrove species. Samples of rhizosphere soil were collected in the depth of 0-10 cm, which was then subjected to detailed physicochemical analysis. Actinomycetes were collected through heating pre-treatment (60oC for 15 min) followed by culturing in the Starch Casein Agar medium supplemented with cycloheximide and nystatin. The screening process of antibiotic-producing Actinomycetes was based on Agar block method against pathogenic microorganisms. Grouping of Actinomycetes was determined by ARDRA fingerprinting analysis. The diversity of Actinomycetes was analyzed based on sequencing of 16S rDNA. The results showed that the distribution of Actinomycetes was found in overwash type, middle zone and upper zone of fringe type including rhizosphere of 7 species of mangrove. The highest population of Actinomycetes was found in rhizosphere of R. mucronata at the overwash type, and the lowest one found in rhizosphere of R. apiculata at the middle zone of fringe type. A total of 77 isolates amongst 167 isolate collection showed antibacterial activities. Forty seven representatives from 77 antibacterial-activities isolates were selected using ARDRA for partial characterization according to their phylogenetic diversity. Sequencing and analysis of 16S rDNA from selectedrepresentative isolates displayed the presence of members associated with Actinomycetes genera such as Streptomyces, Amycolatopsis, Saccharomonospora, and Nocardiopsis. The member of genus Streptomyces such as Streptomyces qinglanensis and Streptomyces champavatii were distributed across locations. Genus Saccharomonospora and Nocardiopsis were mostly found at the overwash type, while Amycolatopsis was found at the upper zone of fringe type.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...