Biodiversitas Journal of Biological Diversity
Vol. 20 No. 4 (2019)

The favorable alleles of AKIRIN2:c.*188G>A, EDG1:c.-312A>G and TTN:g.231054C>T as candidate markers for high-marbling are very low in Bali cattle

SAIFUL ANWAR (Research Center for Biotechnology-Indonesian Institute of Sciences. Jl. Raya Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)
ARI SULISTYO WULANDARI (Research Center for Biotechnology-Indonesian Institute of Sciences. Jl. Raya Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)
WIDYA PINTAKA BAYU PUTRA (Research Center for Biotechnology-Indonesian Institute of Sciences. Jl. Raya Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)
SYAHRUDDIN SAID (Research Center for Biotechnology-Indonesian Institute of Sciences. Jl. Raya Bogor Km. 46, Cibinong, Bogor 16911, West Java, Indonesia)



Article Info

Publish Date
12 Mar 2019

Abstract

Abstract. Anwar S, Wulandari AS, Putra WPB, Said S. 2019. The favorable alleles of AKIRIN2:c.*188G>A, EDG1:c.-312A>G and TTN:g.231054C>T as candidate markers for high-marbling are very low in Bali cattle. Biodiversitas 20: 965-970. Marbling is one of primary factors influencing the palatability of beef. The AKIRIN2, EDG1 and TTN genes are considered as the three candidate genes responsible for high-marbling in beef cattle. This study aimed to investigate the genetic polymorphism of the SNPs of AKIRIN2:c.*188G>A, EDG1:c.-312A>G and TTN g.231054C>T in Bali cattle. A total of 125 DNA samples of Bali cattle were genotyped for AKIRIN2 and TTN gene and 82 DNA samples for EDG1 gene using PCR-RFLP method. In the present study, it was found that the A allele of AKIRIN2:c.*188G>A, the G allele of EDG1:c.-312A>G and the T allele of TTN g.231054C>T that considered as the favorable alleles were found to be very low in Bali cattle (0.004, 0.000, and 0.004, respectively). This results indicated that the polymorphism of AKIRIN2:c.*188G>A, EDG1:c.-312A>G and TTN g.231054C>T were very low and can be considered as monomorphic in Bali cattle. These findings suggested that Bali cattle may not genetically potential as a high-marbling cattle breed. However, the other specific genes for high-marbling still needs to be investigated in Bali cattle.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...