Biodiversitas Journal of Biological Diversity
Vol. 20 No. 6 (2019)

Short Communication: DNA extraction from stored wood of Falcataria moluccana suitable for barcoding analysis

HASYYATI SHABRINA (Tropical Silviculture Program, Department of Silviculture, Faculty of Forestry, Institut Pertanian Bogor. Jl. Ulin, Dramaga Campus, Bogor 16680, West Java, Indonesia)
ULFAH J SIREGAR (Department of Silviculture, Faculty of Forestry, Institut Pertanian Bogor. Jl. Ulin, Dramaga Campus, Bogor 16680, West Java, Indonesia)
DEDEN D MATRA (Department of Agronomy and Horticulture, Faculty of Agriculture, Institut Pertanian Bogor. Jl. Meranti, Dramaga Campus, Bogor, West Java, Indonesia)
KOICHI KAMIYA (Forest Resource Department, Faculty of Agriculture, Ehime University, 3-5-7 Tarumi, Matsuyama, Ehime Prefecture, Japan)
ISKANDAR Z SIREGAR (Department of Silviculture, Faculty of Forestry, Institut Pertanian Bogor. Jl. Ulin, Dramaga Campus, Bogor 16680, West Java, Indonesia)



Article Info

Publish Date
30 May 2019

Abstract

Abstract. Shabrina H, Siregar UJ, Matra DD, Kamiya D, Siregar IZ. 2019. Short Communication: DNA extraction from stored wood of Falcataria moluccana suitable for barcoding analysis. Biodiversitas 20: 1748-1752. Sengon or Falcataria moluccana (Miq.) Barneby & J.W.Grimes is the main crop in community tree plantations in Java, Indonesia, favored because of its fast-growing property and the promising economic return. The wood itself is mostly used for light construction, furniture, plywood, packing materials, and recently as feedstock for bioenergy. Sometimes the wood is used as DNA source for example in the wood identification analysis. However, extracting DNA from woods is considered difficult due particularly to very small quantities of DNA. The objective of this research was to optimize and modify the common CTAB protocols to extract DNA from Sengon wood without liquid nitrogen which sometimes unavailable in some laboratories. The extracted DNA was quantified with nanophotometer and gel visualization and amplified with primer coding psbA-trnH intergenic spacer for testing. The highest concentration of DNA extracted was from 100 mg of wood stored for 24 hours in -30 °C (257.80 ng/µL or 14.18 µg in total) and even the lowest concentration produced by this method able to produce sufficient amount of PCR product for sequencing. Compared with results from 200 mg samples and longer freezing time (72 hours) and extraction using liquid nitrogen, this method considered gave the best results.

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Journal Info

Abbrev

biodiv

Publisher

Subject

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology

Description

The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was ...